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Commit 9f9bb46c authored by Ruqian Lyu's avatar Ruqian Lyu
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update test.sh

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Stage: testStatic
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#!/bin/bash
export PATH="/usr/local/bin/nim-1.4.0/bin:/mnt/mcfiles/rlyu/Software/bcftools-1.9/:/mnt/mcfiles/rlyu/Software/samtools-1.10/:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/bin:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin"
export LD_LIBRARY_PATH="/mnt/mcfiles/rlyu/.nimble/lib/:/mnt/mcfiles/rlyu/Software/htslib/htslib/:"
./src/sscocaller --threads 2 --chrom 6 tests/AAAGTAGCACGTCTCT-1.raw.bam tests/AAAGTAGCACGTCTCT-1.raw.bam.dp3.alt.vcf.gz tests/bcAA.tsv ./tests/tests-
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