From 9f9bb46cd570ce815f303bb460a3cc9908d12f64 Mon Sep 17 00:00:00 2001
From: rlyu <rlyu@svi.edu.au>
Date: Mon, 25 Jan 2021 08:32:35 +1100
Subject: [PATCH] update test.sh

---
 tests/test.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/tests/test.sh b/tests/test.sh
index 4d61099..1ab710d 100644
--- a/tests/test.sh
+++ b/tests/test.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 
+export PATH="/usr/local/bin/nim-1.4.0/bin:/mnt/mcfiles/rlyu/Software/bcftools-1.9/:/mnt/mcfiles/rlyu/Software/samtools-1.10/:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/bin:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin"
+export LD_LIBRARY_PATH="/mnt/mcfiles/rlyu/.nimble/lib/:/mnt/mcfiles/rlyu/Software/htslib/htslib/:"
 
 ./src/sscocaller --threads 2 --chrom 6 tests/AAAGTAGCACGTCTCT-1.raw.bam tests/AAAGTAGCACGTCTCT-1.raw.bam.dp3.alt.vcf.gz tests/bcAA.tsv ./tests/tests-
 
-- 
GitLab