diff --git a/tests/test.sh b/tests/test.sh index 4d61099fcd9473592604c9ae26dae17ed1490eeb..1ab710d4b9e19c5fc90aeb5ecf5dd5583f03c2b3 100644 --- a/tests/test.sh +++ b/tests/test.sh @@ -1,5 +1,7 @@ #!/bin/bash +export PATH="/usr/local/bin/nim-1.4.0/bin:/mnt/mcfiles/rlyu/Software/bcftools-1.9/:/mnt/mcfiles/rlyu/Software/samtools-1.10/:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/bin:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin" +export LD_LIBRARY_PATH="/mnt/mcfiles/rlyu/.nimble/lib/:/mnt/mcfiles/rlyu/Software/htslib/htslib/:" ./src/sscocaller --threads 2 --chrom 6 tests/AAAGTAGCACGTCTCT-1.raw.bam tests/AAAGTAGCACGTCTCT-1.raw.bam.dp3.alt.vcf.gz tests/bcAA.tsv ./tests/tests-