Commit 6596b672 authored by Ruqian Lyu's avatar Ruqian Lyu
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update readme with case study data links

parent 2ef880b2
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......@@ -234,6 +234,14 @@ tar -xvf Tabula_Muris.tar.gz
mv mnt/mcfiles/Datasets/Tabula_Muris data
rm -r mnt
```
#### Case study dataset
The dataset we used in the case study is from (O’Koren et al), you can download
all the relevant files via [this link](https://www.svi.edu.au/MIG_2019_scRNAseq-workshop/case_study_data.tar.gz)
It includes the raw fastqs and processed count matrix data and is of size 2.1GB.
If you would like to start with the count matrix data, please follow the instruction in the [RMarkdown](https://gitlab.svi.edu.au/biocellgen-public/mig_2019_scrnaseq-workshop/blob/master/case_study_data/case_study.Rmd)
to download the processed count matrix data from GEO.
##### Desired results
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