diff --git a/README.md b/README.md index 785d36f1438ae7e13af34f5d40e726daf323a362..27872bec1d89f12781cdf1a599d04397431e7191 100644 --- a/README.md +++ b/README.md @@ -234,6 +234,14 @@ tar -xvf Tabula_Muris.tar.gz mv mnt/mcfiles/Datasets/Tabula_Muris data rm -r mnt ``` +#### Case study dataset + +The dataset we used in the case study is from (O’Koren et al), you can download +all the relevant files via [this link](https://www.svi.edu.au/MIG_2019_scRNAseq-workshop/case_study_data.tar.gz) + +It includes the raw fastqs and processed count matrix data and is of size 2.1GB. +If you would like to start with the count matrix data, please follow the instruction in the [RMarkdown](https://gitlab.svi.edu.au/biocellgen-public/mig_2019_scrnaseq-workshop/blob/master/case_study_data/case_study.Rmd) +to download the processed count matrix data from GEO. ##### Desired results