From 6596b672d71cddfa535ca1f6cf6439b28836fa1b Mon Sep 17 00:00:00 2001
From: rlyu <rlyu@svi.edu.au>
Date: Tue, 1 Oct 2019 17:05:59 +1000
Subject: [PATCH] update readme with case study data links

---
 README.md | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/README.md b/README.md
index 785d36f..27872be 100644
--- a/README.md
+++ b/README.md
@@ -234,6 +234,14 @@ tar -xvf Tabula_Muris.tar.gz
 mv mnt/mcfiles/Datasets/Tabula_Muris data
 rm -r mnt
 ```
+#### Case study dataset
+
+The dataset we used in the case study is from (O’Koren et al), you can download 
+all the relevant files via [this link](https://www.svi.edu.au/MIG_2019_scRNAseq-workshop/case_study_data.tar.gz)
+
+It includes the raw fastqs and processed count matrix data and is of size 2.1GB. 
+If you would like to start with the count matrix data, please follow the instruction in the [RMarkdown](https://gitlab.svi.edu.au/biocellgen-public/mig_2019_scrnaseq-workshop/blob/master/case_study_data/case_study.Rmd) 
+to download the processed count matrix data from GEO.
 
 ##### Desired results
 
-- 
GitLab