Commit 006551be authored by Davis McCarthy's avatar Davis McCarthy
Browse files

Bug fix in DE chapter

parent c925d654
Pipeline #959 passed with stage
in 5 seconds
......@@ -208,7 +208,7 @@ The first steps for this analysis then involve
keep_gene <- (rowSums(counts_mat > 0) > 29.5 & rowMeans(counts_mat) > 0.2)
table(keep_gene)
dge <- DGEList(
counts_mat = counts_mat[keep_gene,],
counts = counts_mat[keep_gene,],
norm.factors = rep(1, length(counts_mat[1,])),
group = group
)
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment