From 006551be069655684ac37a2f20606053c92c175b Mon Sep 17 00:00:00 2001
From: Davis McCarthy <davismcc@gmail.com>
Date: Thu, 3 Oct 2019 07:33:52 +1000
Subject: [PATCH] Bug fix in DE chapter
---
course_files/de-real.Rmd | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/course_files/de-real.Rmd b/course_files/de-real.Rmd
index 3a07166..6429f14 100644
--- a/course_files/de-real.Rmd
+++ b/course_files/de-real.Rmd
@@ -208,7 +208,7 @@ The first steps for this analysis then involve
keep_gene <- (rowSums(counts_mat > 0) > 29.5 & rowMeans(counts_mat) > 0.2)
table(keep_gene)
dge <- DGEList(
- counts_mat = counts_mat[keep_gene,],
+ counts = counts_mat[keep_gene,],
norm.factors = rep(1, length(counts_mat[1,])),
group = group
)
--
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