diff --git a/course_files/de-real.Rmd b/course_files/de-real.Rmd index 3a07166abc14b96bb269ac877d41009a3c30e212..6429f1492771297232af5a628401eae1561662e2 100644 --- a/course_files/de-real.Rmd +++ b/course_files/de-real.Rmd @@ -208,7 +208,7 @@ The first steps for this analysis then involve keep_gene <- (rowSums(counts_mat > 0) > 29.5 & rowMeans(counts_mat) > 0.2) table(keep_gene) dge <- DGEList( - counts_mat = counts_mat[keep_gene,], + counts = counts_mat[keep_gene,], norm.factors = rep(1, length(counts_mat[1,])), group = group )