Commits · 61ee24692959fb45e54f4a47e0251a58e3444251 · BioCellGen-public / MAGE_2020_Marker-Gene-Benchmarking

Apr 13, 2021
- Build site. · 61ee2469
  Jeffrey Pullin authored 4 years ago
  
  61ee2469
- Add new results · b5b2a886
  Jeffrey Pullin authored 4 years ago
  
  b5b2a886
- Delete old `simulation.Rmd` · aeb023f8
  Jeffrey Pullin authored 4 years ago
  
  aeb023f8
Apr 12, 2021
- Move analysis file in the wrong folder · 27e64466
  Jeffrey Pullin authored 4 years ago
  
  27e64466
- Add snakemake step to extract marker genes from the simulated data · 4b97052c
  Jeffrey Pullin authored 4 years ago
  
  4b97052c
- Add initial analysis of FDR curves · 5eb4b4c2
  Jeffrey Pullin authored 4 years ago
  
  5eb4b4c2
Apr 09, 2021
- Add more ROC analysis · 33746c69
  Jeffrey Pullin authored 4 years ago
  
  33746c69
- Add real data heatmaps · 09cfdb83
  Jeffrey Pullin authored 4 years ago
  
  09cfdb83
Apr 08, 2021
- Rename chunk · a5e3f468
  Jeffrey Pullin authored 4 years ago
  
  a5e3f468
- Add tSNE plot of null simulations · 17a56f1b
  Jeffrey Pullin authored 4 years ago
  
  17a56f1b
- Finish rewriting TPR plots to use new framework · 07b49fa5
  Jeffrey Pullin authored 4 years ago
  
  07b49fa5
- Refactor how marker genes are extracted from methods · cd9837ad
  Jeffrey Pullin authored 4 years ago
  cd9837ad
- Add more replicates for # cells simulations and remove certain values · 95f652e3
  Jeffrey Pullin authored 4 years ago
  
  95f652e3
- Add initial analysis of ROC curves · ee6c83ad
  Jeffrey Pullin authored 4 years ago
  
  ee6c83ad
- Remove uneeded files and rename for clarity · a8bbf110
  Jeffrey Pullin authored 4 years ago
  
  a8bbf110
Apr 06, 2021
- Rename tpr-fdr to tpr only · be29ac91
  Jeffrey Pullin authored 4 years ago
  
  be29ac91
- Add preliminary analysis of methods control of FDR · 15059789
  Jeffrey Pullin authored 4 years ago
  
  15059789
- Move countsimqc report to public directory · fbb8a732
  Jeffrey Pullin authored 4 years ago
  
  fbb8a732
Apr 05, 2021
- Add binomial test · ae10855d
  Jeffrey Pullin authored 4 years ago
  
  ae10855d
- Add cluster analysis · b895f6ed
  Jeffrey Pullin authored 4 years ago
  
  b895f6ed
Mar 31, 2021
- Add 50 cell simulations · e45e05d1
  Jeffrey Pullin authored 4 years ago
  
  e45e05d1
- Rewrite visualisation of marker genes · 8866aa70
  Jeffrey Pullin authored 4 years ago
  
  8866aa70
- Refactor concordance analysis · d0369350
  Jeffrey Pullin authored 4 years ago
  
  d0369350
- Switch to lawlor data · 91ae65d9
  Jeffrey Pullin authored 4 years ago
  
  91ae65d9
- Make status.py executable and add it to run.sh · 25dca018
  Jeffrey Pullin authored 4 years ago
  
  25dca018
Mar 29, 2021
- Add script for checking of cluster status · 563fb076
  Jeffrey Pullin authored 4 years ago
  563fb076
- Finish lawlor data processing · ecca8316
  Jeffrey Pullin authored 4 years ago
  ecca8316
Mar 28, 2021
- Add partial processing of lawlor data · 797e05b9
  Jeffrey Pullin authored 4 years ago
  
  797e05b9
- Add countsimQC analysis · 0fd9dec6
  Jeffrey Pullin authored 4 years ago
  0fd9dec6
- Add mean and DE amount TPR plots · 0d7900fc
  Jeffrey Pullin authored 4 years ago
  
  0d7900fc
Mar 27, 2021
- Add missing de.facLoc value to mean simulations · dfae16a8
  Jeffrey Pullin authored 4 years ago
  
  dfae16a8
- Add simulations to explore the impact of mean parameters · 9cc43456
  Jeffrey Pullin authored 4 years ago
  
  9cc43456
- Add more visualisation of possible mean parameter choices · cbe95e9c
  Jeffrey Pullin authored 4 years ago
  
  cbe95e9c
- Add simulations with changing de.facLoc · 5321840b
  Jeffrey Pullin authored 4 years ago
  
  5321840b
- Add visualisation of mean in simulations · e7e71fdb
  Jeffrey Pullin authored 4 years ago
  
  e7e71fdb
- Actually delete the file... · 20ea08d2
  Jeffrey Pullin authored 4 years ago
  
  20ea08d2
- Rename pbmc3k analysis file · ea4b53b9
  Jeffrey Pullin authored 4 years ago
  
  ea4b53b9
- Update 27/3/2021 · 67878514
  Jeffrey Pullin authored 4 years ago
  
  67878514
Mar 16, 2021
- Update 16/3/2021 · 3a4cb2e5
  Jeffrey Pullin authored 4 years ago
  3a4cb2e5
Mar 01, 2021
- Switch to Spartan · 0135ba33
  Jeffrey Pullin authored 4 years ago
  
  0135ba33