Add more replicates for # cells simulations and remove certain values

code/simulation-pars.R

@@ -31,7 +31,6 @@ standard_sims <- expand_grid(
 mean_sims <- expand_grid(
   label = "mean_sim",
   de.facLoc = 2,
-
   rep = 1:2,
   batchCells = 2000,
   n_clus = 5,
@@ -64,9 +63,9 @@ num_cells_sims <- expand_grid(
   label = "num_cells",
   data_id = "lawlor",
   de.facLoc = 2,
-  rep = 1:2,
+  rep = 1:3,
   n_clus = 5,
-  batchCells = c(50, 100, 500, seq(1000, 3000, by = 1000)),
+  batchCells = c(100, 500, 1000, 2000, 3000),
   group.prob = list(rep(1 / 5, 5)),
 ) %>%
   rowid_to_column() %>%