Commit 842a08cb authored by Lucy McNeill's avatar Lucy McNeill
Browse files

update documentation for auto_crop_fast

parent e0db5ba7
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......@@ -29,7 +29,7 @@ auto_crop_fast(
crowded_cells = "FALSE",
watershed_radius = 50,
watershed_tol = 0.2,
cropping_factor = 1
cropping_factor = 1.3
)
}
\arguments{
......@@ -76,7 +76,8 @@ illuminating foci. Defaults to MLH3}
\item{file_ext}{file extension of your images e.g. tif jpeg or png.}
\item{third_channel}{Optional, defaults to "off".}
\item{third_channel}{Optional, defaults to "off". Set to "on" if you would
also like crops of the third channel.}
\item{cell_aspect_ratio}{Maximum aspect ratio of blob to be defined as a cell}
......
......@@ -86,7 +86,8 @@ illuminating foci. Defaults to MLH3}
\item{file_ext}{file extension of your images e.g. tif jpeg or png.}
\item{third_channel}{Optional, defaults to "off".}
\item{third_channel}{Optional, defaults to "off". Set to "on" if you would
also like crops of the third channel.}
\item{path_out, }{user specified output path. Defaults to img_path}
......
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