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Lucy McNeill
synapsis
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842a08cb
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842a08cb
authored
3 years ago
by
Lucy McNeill
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update documentation for auto_crop_fast
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man/auto_crop_fast.Rd
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man/auto_crop_fast.Rd
man/crop_single_object_fast.Rd
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man/crop_single_object_fast.Rd
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man/auto_crop_fast.Rd
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@@ -29,7 +29,7 @@ auto_crop_fast(
crowded_cells = "FALSE",
watershed_radius = 50,
watershed_tol = 0.2,
cropping_factor = 1
cropping_factor = 1
.3
)
}
\arguments{
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@@ -76,7 +76,8 @@ illuminating foci. Defaults to MLH3}
\item{file_ext}{file extension of your images e.g. tif jpeg or png.}
\item{third_channel}{Optional, defaults to "off".}
\item{third_channel}{Optional, defaults to "off". Set to "on" if you would
also like crops of the third channel.}
\item{cell_aspect_ratio}{Maximum aspect ratio of blob to be defined as a cell}
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man/crop_single_object_fast.Rd
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@@ -86,7 +86,8 @@ illuminating foci. Defaults to MLH3}
\item{file_ext}{file extension of your images e.g. tif jpeg or png.}
\item{third_channel}{Optional, defaults to "off".}
\item{third_channel}{Optional, defaults to "off". Set to "on" if you would
also like crops of the third channel.}
\item{path_out, }{user specified output path. Defaults to img_path}
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