Commits · ffa244a9a320f6a9fb6677dd25da3585943fb74b · BioCellGen-public / sirplus · GitLab

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Oct 05, 2017
- Merge branch 'zinb' · ffa244a9
  Luke Zappia authored 7 years ago
  
  * zinb: Add ZINB-WaVE simulation to lists
  ffa244a9
- Add ZINB-WaVE simulation to lists · a9848416
  Luke Zappia authored 7 years ago
  
  a9848416
- Convert mfaSimulate output to counts · 9267f271
  Luke Zappia authored 7 years ago
  
  9267f271
- Merge branch 'zinb' · eafecf42
  Luke Zappia authored 7 years ago
  
  * zinb: Add zinbEstimate Add zinbSimulate Adjust ZINBParams defaults Add ZINBParams tests Add ZINBParams Fixes #14
  eafecf42
- Merge branch 'pheno' · 87959983
  Luke Zappia authored 7 years ago
  
  * pheno: Convert phenoSimulate output to counts Fixes #19
  87959983
- Convert phenoSimulate output to counts · a681f864
  Luke Zappia authored 7 years ago
  
  a681f864
- Add zinbEstimate · 321c2d0c
  Luke Zappia authored 7 years ago
  
  321c2d0c
Oct 04, 2017
- Add zinbSimulate · 07b6db66
  Luke Zappia authored 7 years ago
  
  07b6db66
- Adjust ZINBParams defaults · bac0ecf8
  Luke Zappia authored 7 years ago
  
  bac0ecf8
- Add ZINBParams tests · d6c7bab0
  Luke Zappia authored 7 years ago
  
  d6c7bab0
- Add ZINBParams · e0017803
  Luke Zappia authored 7 years ago
  
  e0017803
- Merge branch 'pheno' · 2cc9f32b
  Luke Zappia authored 7 years ago
  
  * pheno: Add pheno to lists Add phenoEstimate Add phenoSimulate Add PhenoParams Fix quotes bug in tests
  2cc9f32b
- Add pheno to lists · aa3d2663
  Luke Zappia authored 7 years ago
  
  aa3d2663
- Add phenoEstimate · 3ae99172
  Luke Zappia authored 7 years ago
  
  3ae99172
- Add phenoSimulate · 6f488ee2
  Luke Zappia authored 7 years ago
  
  6f488ee2
- Add PhenoParams · aae77a9c
  Luke Zappia authored 7 years ago
  
  aae77a9c
- Merge branch 'setup' into pheno · b4e0f76f
  Luke Zappia authored 7 years ago
  
  * setup: Fix quotes bug in tests
  b4e0f76f
- Fix quotes bug in tests · 22e3512d
  Luke Zappia authored 7 years ago
  
  22e3512d
Oct 02, 2017
- Merge branch 'master' into setup · 6fd0429b
  Luke Zappia authored 7 years ago
  
  * master: Bump version
  6fd0429b
- Bump version · 128468c8
  Luke Zappia authored 7 years ago
  
  View commits for tag v1.1.6 v1.1.6
  
  128468c8
- Merge branch 'mfa' · 0b633ea0
  Luke Zappia authored 7 years ago
  
  * mfa: Add mfa tests Add mfa to lists Add mfaSimulate Add mfaEstimate Add MFAParams
  0b633ea0
- Merge branch 'scDD-update' · b90aea28
  Luke Zappia authored 7 years ago
  
  * scDD-update: Run checks Update scDDEstimate Update SCDDParams Update scDDSimulate
  b90aea28
Oct 01, 2017
- Add mfa tests · 114a5aad
  Luke Zappia authored 7 years ago
  
  114a5aad
- Run checks · 5e63dfce
  Luke Zappia authored 7 years ago
  
  5e63dfce
- Add mfa to lists · dbac87de
  Luke Zappia authored 7 years ago
  
  dbac87de
- Add mfaSimulate · dd3df053
  Luke Zappia authored 7 years ago
  
  dd3df053
- Add mfaEstimate · 712fe45c
  Luke Zappia authored 7 years ago
  
  712fe45c
Sep 29, 2017
- Add MFAParams · d173ae09
  Luke Zappia authored 7 years ago
  
  d173ae09
- Update scDDEstimate · cfbad4d5
  Luke Zappia authored 7 years ago
  
  cfbad4d5
- Update SCDDParams · 31fb64a3
  Luke Zappia authored 7 years ago
  
  31fb64a3
- Update scDDSimulate · f2f4f84f
  Luke Zappia authored 7 years ago
  
  f2f4f84f
Sep 13, 2017
- Merge branch 'SCE' · 4d70c34c
  Luke Zappia authored 7 years ago
  
  * SCE: Build pkgdown Run checks Update README Update vignette to SCE Fix error in simulating batches Switch to BiocGenerics::counts Update SCE and comparison functions Fix accessing counts Update simulation documentation Convert simulations to SingleCellExperiment
  View commits for tag v1.1.5 v1.1.5
  
  4d70c34c
- Build pkgdown · 9e68748f
  Luke Zappia authored 7 years ago
  
  9e68748f
- Run checks · bce9b2ce
  Luke Zappia authored 7 years ago
  
  bce9b2ce
- Update README · e27d2a0c
  Luke Zappia authored 7 years ago
  
  e27d2a0c
- Update vignette to SCE · 16f30d17
  Luke Zappia authored 7 years ago
  
  16f30d17
- Fix error in simulating batches · 7724df73
  Luke Zappia authored 7 years ago
  
  Problem using factor to index matrix
  7724df73
Sep 08, 2017
- Switch to BiocGenerics::counts · 779ff32f
  Luke Zappia authored 7 years ago
  
  779ff32f
Sep 07, 2017
- Update SCE and comparison functions · 81ed90d1
  Luke Zappia authored 7 years ago
  
  81ed90d1
- Fix accessing counts · a8351690
  Luke Zappia authored 7 years ago
  
  a8351690