- Oct 13, 2016
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Luke Zappia authored
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Luke Zappia authored
Make it clearer what is new and old
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Luke Zappia authored
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Luke Zappia authored
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- Oct 12, 2016
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Luke Zappia authored
* lun: Run checks Fix doc links to other packages Document simLun Add DE to simLun Add addition Lun params to splatParams Add basic simLun function
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
* simple: Add tests for simple simulation Rename splat sub functions to differentiate Add simSimple function
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Luke Zappia authored
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Luke Zappia authored
The splat sub function names were in the same format as the simulation names. Changed to make it obvious they are different.
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Luke Zappia authored
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Luke Zappia authored
* simulate: (22 commits) Test that splat output is a valid SCESet Add single mode to splat Allow different DE parameters for each group/path Add progress messages Add seed paramater and seed simulation Rename n.genes, n.cells, n.groups for consistency Modify outlier expression to use median Run checks Add simulation documentation Add simPathCellMeans function Add expandPathParms function Add simPathDE function Add extra checks checkParams Fix bug in mergeParams Add simDropout function Add simTrueCount function Add simBCVMeans function Add simGroupCellMeans function Add simulateLibSizes function Add simulateDE function ...
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Luke Zappia authored
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Luke Zappia authored
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- Oct 11, 2016
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
Should make sure they are actual outliers and better matches the estimation method.
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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- Oct 10, 2016
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Luke Zappia authored
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Luke Zappia authored
Rename old function to include group
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Luke Zappia authored
Check that path.from has possible values
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Luke Zappia authored
Check if any is.na to avoid warning
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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- Oct 09, 2016
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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- Oct 07, 2016
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Luke Zappia authored
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- Oct 06, 2016
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Luke Zappia authored
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