* basics:
  Add BASiCS to lists
  Run checks
  Convert to SingleCellExperiment
  Fix lun2Estimate error
  Fix lun2Estimate error
  Fix default MCMC iterations
  Add estimation without spike-ins
  Set default MCMC iterations
  Update BASiCSParams print method
  Add BASiCS to listSims
  Add require check to newBASiCSParams
  Add BASiCSEstimate
  Updata BASiCSParams docs
  Add batches to BASiCSSimulate
  Add batch parameters
  Add BASiCSSimulate function
  Add nSpikes parameter
  Add BASiCSParams tests
  Add BASiCSParams class

* master: (50 commits)
  Run checks and bump version
  Add ZINB-WaVE simulation to lists
  Convert mfaSimulate output to counts
  Convert phenoSimulate output to counts
  Add zinbEstimate
  Add zinbSimulate
  Adjust ZINBParams defaults
  Add ZINBParams tests
  Add ZINBParams
  Add pheno to lists
  Add phenoEstimate
  Add phenoSimulate
  Add PhenoParams
  Fix quotes bug in tests
  Bump version
  Add mfa tests
  Run checks
  Add mfa to lists
  Add mfaSimulate
  Add mfaEstimate
  ...

* zinb:
  Add ZINB-WaVE simulation to lists

* zinb:
  Add zinbEstimate
  Add zinbSimulate
  Adjust ZINBParams defaults
  Add ZINBParams tests
  Add ZINBParams

Fixes #14

* pheno:
  Convert phenoSimulate output to counts

Fixes #19

* pheno:
  Add pheno to lists
  Add phenoEstimate
  Add phenoSimulate
  Add PhenoParams
  Fix quotes bug in tests

* setup:
  Fix quotes bug in tests

* master:
  Bump version

* mfa:
  Add mfa tests
  Add mfa to lists
  Add mfaSimulate
  Add mfaEstimate
  Add MFAParams

* scDD-update:
  Run checks
  Update scDDEstimate
  Update SCDDParams
  Update scDDSimulate

* SCE:
  Build pkgdown
  Run checks
  Update README
  Update vignette to SCE
  Fix error in simulating batches
  Switch to BiocGenerics::counts
  Update SCE and comparison functions
  Fix accessing counts
  Update simulation documentation
  Convert simulations to SingleCellExperiment