- Jan 20, 2020
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Christina Azodi authored
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Christina Azodi authored
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Christina Azodi authored
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Christina Azodi authored
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- Dec 13, 2019
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
* upstream/master: bump x.y.z version to odd y after creation of RELEASE_3_10 branch bump x.y.z version to even y prior to creation of RELEASE_3_10 branch Fix NEWS file format
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- Oct 30, 2019
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Nitesh Turaga authored
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Nitesh Turaga authored
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- Oct 24, 2019
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lshep authored
- missing end of section header
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- Oct 20, 2019
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
* 'master' of git.bioconductor.org:packages/splatter: addPer*QC() functions were renamed in scater 1.13.27
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- Oct 19, 2019
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Hervé Pagès authored
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- Oct 16, 2019
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Luke Zappia authored
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Luke Zappia authored
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- Oct 11, 2019
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Luke Zappia authored
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Luke Zappia authored
* ci: Tell Appveyor to install GenomeInfoDbData from GH Install GenomeInfoDbData on Appveyor Install GenomeInfoDB on appveyor Tell Appveyor to install devtools Update Travis dist to xenial Switch appveyor to R release
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
* master: (49 commits) Fix where simpleSimulate stores params Check for counts assay when estimating from SCE Check spelling Build pkgdown Run checks Rename Splotch to Kersplat Add Splotch to listSims Document Splotch estimation functions Document Splotch simulation functions Minor Splotch changes Add doublets to SplotchSimulate Add ambient expression and empty cells to Splotch Rescale Phi when sampling in BASiCSSimulate Adjust BASiCSSimulate to match devel BASiCS Fix bug in NAMESPACE Add BCV adjustment to Splotch Add density sampling option for means, lib sizes Add violins to comparison plots Replace library size log-norm with density Fix splotchEstimate example ...
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Luke Zappia authored
Fixes #72
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Luke Zappia authored
Fixes #82
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Luke Zappia authored
* kersplat: (23 commits) Check spelling Build pkgdown Run checks Rename Splotch to Kersplat Add Splotch to listSims Document Splotch estimation functions Document Splotch simulation functions Minor Splotch changes Add doublets to SplotchSimulate Add ambient expression and empty cells to Splotch Add BCV adjustment to Splotch Add density sampling option for means, lib sizes Add violins to comparison plots Replace library size log-norm with density Fix splotchEstimate example Add expression outliers to Splotch Fix bug in selectFit Add splotchEstimate function Simulate counts and organise functions Add library size params and simulate cell means ...
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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- Oct 10, 2019
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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- Oct 09, 2019
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Luke Zappia authored
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- Oct 01, 2019
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Luke Zappia authored
* Change default cells.design to end of path * Add experimental warning * Avoid resetting cells.design
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- Sep 26, 2019
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Luke Zappia authored
Might need a bit more work...
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- Sep 24, 2019
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Luke Zappia authored
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- Sep 19, 2019
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Luke Zappia authored
* master: Rescale Phi when sampling in BASiCSSimulate Adjust BASiCSSimulate to match devel BASiCS
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Luke Zappia authored
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- Sep 17, 2019
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Luke Zappia authored
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- Sep 09, 2019
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Luke Zappia authored
* master: Fix bug in NAMESPACE
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