Commits · 7378a1aa0194a57586ff1f52a80f540313551f23 · BioCellGen-public / sirplus

Feb 14, 2020
- added eQTLEstimate function and eqtl params as an S4 parameters object · d8f09d03
  Christina Azodi authored 5 years ago
  
  d8f09d03
Feb 11, 2020
- add eQTL parameters S4 object information · e460328a
  Christina Azodi authored 5 years ago
  
  e460328a
Oct 11, 2019
- Run checks · 644e6d84
  Luke Zappia authored 5 years ago
  
  644e6d84
- Run checks · 55145cca
  Luke Zappia authored 5 years ago
  
  55145cca
Oct 10, 2019
- Rename Splotch to Kersplat · bf41552b
  Luke Zappia authored 5 years ago
  
  bf41552b
- Rename Splotch to Kersplat · 4462511d
  Luke Zappia authored 5 years ago
  
  4462511d
Oct 09, 2019
- Document Splotch simulation functions · 3370996d
  Luke Zappia authored 5 years ago
  
  3370996d
- Document Splotch simulation functions · 9046703e
  Luke Zappia authored 5 years ago
  
  9046703e
Oct 01, 2019

Luke Zappia authored 5 years ago

* Change default cells.design to end of path
* Add experimental warning
* Avoid resetting cells.design

5141747e

Minor Splotch changes · 22c49d09

Luke Zappia authored 5 years ago

* Change default cells.design to end of path
* Add experimental warning
* Avoid resetting cells.design

22c49d09

Sep 26, 2019
- Add doublets to SplotchSimulate · 09521792
  Luke Zappia authored 5 years ago
  
  Might need a bit more work...
  09521792
- Add doublets to SplotchSimulate · de7cf890
  Luke Zappia authored 5 years ago
  
  Might need a bit more work...
  de7cf890
Sep 24, 2019
- Add ambient expression and empty cells to Splotch · 4d22ead2
  Luke Zappia authored 5 years ago
  
  4d22ead2
- Add ambient expression and empty cells to Splotch · 790a051b
  Luke Zappia authored 5 years ago
  
  790a051b
Aug 29, 2019
- Add BCV adjustment to Splotch · 23992b03
  Luke Zappia authored 5 years ago
  
  New exponential correction method for bcv.common estimates
  23992b03
- Add BCV adjustment to Splotch · 540b62d0
  Luke Zappia authored 5 years ago
  
  New exponential correction method for bcv.common estimates
  540b62d0
Aug 22, 2019
- Add density sampling option for means, lib sizes · 69ba7ee1
  Luke Zappia authored 5 years ago
  
  69ba7ee1
- Add density sampling option for means, lib sizes · 7d1fcd34
  Luke Zappia authored 5 years ago
  
  7d1fcd34
Aug 21, 2019
- Replace library size log-norm with density · 9cb977b7
  Luke Zappia authored 5 years ago
  
  Not sure if this this a good plan...
  9cb977b7
- Replace library size log-norm with density · de1c10d9
  Luke Zappia authored 5 years ago
  
  Not sure if this this a good plan...
  de1c10d9
Aug 20, 2019
- Add expression outliers to Splotch · 6895ab06
  Luke Zappia authored 5 years ago
  
  6895ab06
- Add expression outliers to Splotch · dc9f6823
  Luke Zappia authored 5 years ago
  
  dc9f6823
Jul 17, 2019
- Add library size params and simulate cell means · 2151840f
  Luke Zappia authored 5 years ago
  
  2151840f
- Add library size params and simulate cell means · 945343c7
  Luke Zappia authored 5 years ago
  
  945343c7
Jul 16, 2019
- Add paths parameters · 7afee23b
  Luke Zappia authored 5 years ago
  
  7afee23b
- Add paths parameters · effef406
  Luke Zappia authored 5 years ago
  
  effef406
- Add mean parameters · fbf8f8ec
  Luke Zappia authored 5 years ago
  
  fbf8f8ec
- Add mean parameters · 61985cae
  Luke Zappia authored 5 years ago
  
  61985cae
Jul 11, 2019
- Add SplotchParams object · 9bc0a897
  Luke Zappia authored 5 years ago
  
  Basic skeleton so far
  9bc0a897
- Add SplotchParams object · a98dad15
  Luke Zappia authored 5 years ago
  
  Basic skeleton so far
  a98dad15
Apr 18, 2019
- Add Splat parameters vignette · ff7f4ab7
  Luke Zappia authored 5 years ago
  
  Fix spelling
  View commits for tag v1.7.5 v1.7.5
  
  ff7f4ab7
- Add Splat parameters vignette · 9657ff62
  Luke Zappia authored 5 years ago
  
  Fix spelling
  9657ff62
- Rename path.length to path.nSteps · 85748884
  Luke Zappia authored 5 years ago
  
  85748884
- Rename path.length to path.nSteps · 426139b9
  Luke Zappia authored 5 years ago
  
  426139b9
Apr 15, 2019
- Minor changes to documentation · 4ff20b74
  Luke Zappia authored 5 years ago
  
  Fixes #64 Also remove lingering references to phenoData and featureData
  4ff20b74
- Minor changes to documentation · 5e9caa07
  Luke Zappia authored 5 years ago
  
  Fixes #64 Also remove lingering references to phenoData and featureData
  5e9caa07
Apr 19, 2018
- Add sparseDCEstimate · 4cad5734
  Luke Zappia authored 6 years ago
  
  4cad5734
- Add sparseDCEstimate · 17903ea5
  Luke Zappia authored 6 years ago
  
  17903ea5
- Add sparseDCSimulate · f2553a9d
  Luke Zappia authored 6 years ago
  
  f2553a9d
- Add sparseDCSimulate · c8c0fcf8
  Luke Zappia authored 6 years ago
  
  c8c0fcf8