Commits · 17561692357c5405f2ec0bbdccce1c383bcb4e19 · BioCellGen-public / sirplus

Oct 22, 2018
- Add WithSpike when calling BASiCS_MCMC · f120b2bb
  Luke Zappia authored 6 years ago
  
  f120b2bb
Aug 16, 2018
- Add regression parameter to BASiCSEstimate · 8cf29fcf
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  8cf29fcf
- Add regression parameter to BASiCSEstimate · d337c0ec
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  d337c0ec
- Update Roxygen version · 45c4bea0
  Luke Zappia authored 6 years ago
  
  45c4bea0
Jun 12, 2018
- Fix errors in splatEstLib normality test · a53f172a
  Luke Zappia authored 6 years ago
  
  Fixes #48
  a53f172a
- Fix errors in splatEstLib normality test · cb68cd74
  Luke Zappia authored 6 years ago
  
  Fixes #48
  cb68cd74
Apr 30, 2018
- Set seed in sparseDCEstimate tests and bump ver · cd579979
  Luke Zappia authored 6 years ago
  
  These would sometimes error due to sampling of example dataset
  cd579979
Apr 25, 2018
- Bump version to 1.3.5 · 83538788
  Luke Zappia authored 6 years ago
  
  83538788
Apr 19, 2018
- Run checks · d639dacf
  Luke Zappia authored 6 years ago
  
  d639dacf
Apr 18, 2018
- Improve printing of data.frame parameters · 1028a89f
  Luke Zappia authored 6 years ago
  
  Fixes #17
  1028a89f
- Simplify problematic doc links · e21d26b2
  Luke Zappia authored 6 years ago
  
  e21d26b2
Apr 13, 2018
- Run checks · 78dc86d0
  Luke Zappia authored 6 years ago
  
  78dc86d0
- Add lib.norm to splatEstimate · 23c1094a
  Luke Zappia authored 6 years ago
  
  23c1094a
- Add lib.norm to splatSimulate · b37e35c3
  Luke Zappia authored 6 years ago
  
  b37e35c3
Apr 12, 2018
- Run checks · d804ec40
  Luke Zappia authored 6 years ago
  
  d804ec40
- Change dropout.present to dropout.type · 2193558f
  Luke Zappia authored 6 years ago
  
  2193558f
Mar 27, 2018
- Fix parameter passing bug in scDDEstimate · 4316f594
  Luke Zappia authored 6 years ago
  
  4316f594
Jan 30, 2018
- Remove references to SCESets · 55d75ac1
  Luke Zappia authored 7 years ago
  
  55d75ac1
- Move scater to imports · 74940a18
  Luke Zappia authored 7 years ago
  
  74940a18
Oct 13, 2017
- Update lun2 reference · 4a4e17dc
  Luke Zappia authored 7 years ago
  
  4a4e17dc
- Update citation · b5fed63d
  Luke Zappia authored 7 years ago
  
  b5fed63d
- Run checks · f5da0def
  Luke Zappia authored 7 years ago
  
  f5da0def
- Convert to SingleCellExperiment · d828f4d3
  Luke Zappia authored 7 years ago
  
  d828f4d3
Oct 05, 2017
- Convert mfaSimulate output to counts · 9267f271
  Luke Zappia authored 7 years ago
  
  9267f271
- Convert phenoSimulate output to counts · a681f864
  Luke Zappia authored 7 years ago
  
  a681f864
- Add zinbEstimate · 321c2d0c
  Luke Zappia authored 7 years ago
  
  321c2d0c
Oct 04, 2017
- Add zinbSimulate · 07b6db66
  Luke Zappia authored 7 years ago
  
  07b6db66
- Add ZINBParams · e0017803
  Luke Zappia authored 7 years ago
  
  e0017803
- Add phenoEstimate · 3ae99172
  Luke Zappia authored 7 years ago
  
  3ae99172
- Add phenoSimulate · 6f488ee2
  Luke Zappia authored 7 years ago
  
  6f488ee2
Oct 01, 2017
- Run checks · 5e63dfce
  Luke Zappia authored 7 years ago
  
  5e63dfce
- Add mfaSimulate · dd3df053
  Luke Zappia authored 7 years ago
  
  dd3df053
- Add mfaEstimate · 712fe45c
  Luke Zappia authored 7 years ago
  
  712fe45c
Sep 29, 2017
- Add MFAParams · d173ae09
  Luke Zappia authored 7 years ago
  
  d173ae09
- Update scDDEstimate · cfbad4d5
  Luke Zappia authored 7 years ago
  
  cfbad4d5
- Update SCDDParams · 31fb64a3
  Luke Zappia authored 7 years ago
  
  31fb64a3
Sep 13, 2017
- Run checks · bce9b2ce
  Luke Zappia authored 7 years ago
  
  bce9b2ce
Sep 07, 2017
- Update SCE and comparison functions · 81ed90d1
  Luke Zappia authored 7 years ago
  
  81ed90d1
- Update simulation documentation · e1de64de
  Luke Zappia authored 7 years ago
  
  e1de64de
Jul 20, 2017

Merge branch 'master' into devel · 94be54a8

Luke Zappia authored 7 years ago

* master:
  Change mean-dropout to mean-zeros
  Add verbose to scDDEstimate

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131415 bc3139a8-67e5-0310-9ffc-ced21a209358

94be54a8