Merge pull request #35 from Oshlack/ci

Fix appveyor

.travis.yml

@@ -3,7 +3,7 @@
 language: R
 r:
   - bioc-devel
-  - bioc-release
+#  - bioc-release
 sudo: false
 cache: packages
 

NAMESPACE

@@ -115,7 +115,6 @@ importFrom(methods,new)
 importFrom(methods,slot)
 importFrom(methods,slotNames)
 importFrom(methods,validObject)
-importFrom(scater,newSCESet)
 importFrom(stats,dnbinom)
 importFrom(stats,median)
 importFrom(stats,model.matrix)

R/BASiCS-simulate.R

@@ -27,7 +27,6 @@
 #' @examples
 #' sim <- BASiCSSimulate()
 #' @export
-#' @importFrom scater newSCESet
 BASiCSSimulate <- function(params = newBASiCSParams(), verbose = TRUE, ...) {
 
     checkmate::assertClass(params, "BASiCSParams")

appveyor.yml

@@ -15,11 +15,12 @@ install:
 environment:
     matrix:
     - R_VERSION: devel
-
-    - R_VERSION: release
+#    - R_VERSION: release
+    USE_RTOOLS: true
 
 build_script:
   - travis-tool.sh install_bioc_deps
+  - travis-tool.sh install_bioc GenomeInfoDb DelayedArray BASiCS
 
 test_script:
   - travis-tool.sh run_tests