diff --git a/.travis.yml b/.travis.yml index f9364be4143569c62ed08e45d4305f378ec6b347..c0cc748b3c28c71b15e7ffa24eb327c46fcda7d2 100644 --- a/.travis.yml +++ b/.travis.yml @@ -3,7 +3,7 @@ language: R r: - bioc-devel - - bioc-release +# - bioc-release sudo: false cache: packages diff --git a/NAMESPACE b/NAMESPACE index 642439f7ddb59588e139aa67551ae8d178874290..10ec6366eedc40429d531449e2701f3c72a8c7d4 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -115,7 +115,6 @@ importFrom(methods,new) importFrom(methods,slot) importFrom(methods,slotNames) importFrom(methods,validObject) -importFrom(scater,newSCESet) importFrom(stats,dnbinom) importFrom(stats,median) importFrom(stats,model.matrix) diff --git a/R/BASiCS-simulate.R b/R/BASiCS-simulate.R index 7b80d69fdc3b48d3c884def858696afca9731be5..78dfa9d47dda34d345a29733daa6c841cbb0e4b7 100644 --- a/R/BASiCS-simulate.R +++ b/R/BASiCS-simulate.R @@ -27,7 +27,6 @@ #' @examples #' sim <- BASiCSSimulate() #' @export -#' @importFrom scater newSCESet BASiCSSimulate <- function(params = newBASiCSParams(), verbose = TRUE, ...) { checkmate::assertClass(params, "BASiCSParams") diff --git a/appveyor.yml b/appveyor.yml index af7524cc373e24ad02a29d1602a955183e0d74e3..d17738154cca950cb9925ccb150335fef575ed68 100644 --- a/appveyor.yml +++ b/appveyor.yml @@ -15,11 +15,12 @@ install: environment: matrix: - R_VERSION: devel - - - R_VERSION: release +# - R_VERSION: release + USE_RTOOLS: true build_script: - travis-tool.sh install_bioc_deps + - travis-tool.sh install_bioc GenomeInfoDb DelayedArray BASiCS test_script: - travis-tool.sh run_tests