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BioCellGen-public
sgcocaller
Commits
c72fa19b
Commit
c72fa19b
authored
3 years ago
by
Ruqian Lyu
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adding gitlab ci and nimble file
parent
412415fc
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Pipeline
#9243
failed
3 years ago
Stage: buildStatic
Stage: testStatic
Changes
2
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1
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.gitlab-ci.yml
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-0
69 additions, 0 deletions
.gitlab-ci.yml
sgcocaller.nimble
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18 additions, 0 deletions
sgcocaller.nimble
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.gitlab-ci.yml
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c72fa19b
stages
:
-
buildStatic
-
testStatic
variables
:
before_script
:
#alpine
#
buildStatic
:
tags
:
-
docker
image
:
svirlyu/sscocaller_nsb
stage
:
buildStatic
script
:
-
/usr/local/bin/nsb -s ./src/sgcocaller.nim -n sgcocaller.nimble -o . -- --d:release --threads:on
-
ls -l ./src
artifacts
:
paths
:
-
./src/sgcocaller
testUbuntu
:
tags
:
-
docker
image
:
ubuntu
stage
:
testStatic
script
:
-
./src/sgcocaller -h
testDebian
:
tags
:
-
docker
image
:
debian
stage
:
testStatic
script
:
-
./src/sgcocaller -h
testRedHat
:
stage
:
testStatic
script
:
-
./src/sgcocaller -h
## shell executer
##testFunction:
## stage: testStatic
## script:
## - sh tests/test.sh
testAlpine
:
tags
:
-
docker
image
:
alpine
stage
:
testStatic
script
:
-
./src/sgcocaller -h
#release:
#i tag_name: $CI_COMMIT_TAG
# script:
# - echo "create static build"
# image: registry.gitlab.com/gitlab-org/release-cli:latest
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sgcocaller.nimble
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c72fa19b
# Package
version = "0.3.3"
author = "Ruqian Lyu"
description = "sgcocaller: calling crossovers from single-gamete DNA sequencing datasets"
license = "MIT"
srcDir = "src"
bin = @["sgcocaller"]
# Dependencies
requires "nim >= 1.0.0","docopt","hts >= 0.3.4"
requires "https://github.com/ruqianl/distributions.git"
# task test, "run the tests":
# exec "nim c -d:useSysAssert -d:useGcAssert --lineDir:on --debuginfo -r tests/test_groups"
# exec "bash tests/functional-tests.sh"
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