reorganise structure

63f7247b · Ruqian Lyu · d9b473fe · 63f7247b · 63f7247b · 63f7247b
Commit 63f7247b authored 3 years ago by Ruqian Lyu
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -15,7 +15,7 @@ buildStatic:
  image: svirlyu/sscocaller_nsb
  stage: buildStatic
  script:
-    - /usr/local/bin/nsb -s sgcocaller.nim -n sgcocaller.nimble -o . -- --d:release --threads:on
+    - /usr/local/bin/nsb -s ./src/sgcocaller.nim -n sgcocaller.nimble -o . -- --d:release --threads:on
    - ls -l .
  artifacts:
    paths:

--- a/Dockerfile
+++ b/Dockerfile
@@ -67,7 +67,7 @@ RUN \
 ENV HTSLIB=system
 ENV PATH=$PATH:~/.cargo/bin/

-RUN
+RUN \
    git clone https://gitlab.svi.edu.au/biocellgen-public/sgcocaller.git && \
    cd sgcocaller && \
    nimble install .

--- a/src/private/correctPhase
+++ b/src/private/correctPhase
--- a/private/correctPhase.nim
+++ b/private/correctPhase.nim
--- a/private/findGtNodes.nim
+++ b/private/findGtNodes.nim
--- a/private/findPath.nim
+++ b/private/findPath.nim
--- a/private/findTemplateCell.nim
+++ b/private/findTemplateCell.nim
--- a/private/getGtMtx.nim
+++ b/private/getGtMtx.nim
--- a/private/graph.nim
+++ b/private/graph.nim
--- a/private/inferMissingSnps.nim
+++ b/private/inferMissingSnps.nim
--- a/src/private/sgcocaller_sxo
+++ b/src/private/sgcocaller_sxo
--- a/private/sgcocaller_sxo.nim
+++ b/private/sgcocaller_sxo.nim
--- a/src/private/sgphase
+++ b/src/private/sgphase
--- a/private/sgphase.nim
+++ b/private/sgphase.nim
--- a/private/utils.nim
+++ b/private/utils.nim
--- a/private/writeVCF.nim
+++ b/private/writeVCF.nim
--- a/src/private/write_out_vcf
+++ b/src/private/write_out_vcf
--- a/sgcocaller.nim
+++ b/sgcocaller.nim