Commit f2f6078e authored by Ruqian Lyu's avatar Ruqian Lyu
Browse files

Dockerfile merge

parent 1476d108
Pipeline #1163 passed with stage
in 7 seconds
......@@ -15,7 +15,6 @@ RUN sudo add-apt-repository ppa:ubuntugis/ppa && sudo apt-get update
#RUN sudo apt-get update && apt-get install -yq --no-install-recommends python3-pip python3-setuptools
RUN sudo apt-get update && apt-get install -yq --no-install-recommends gdal-bin libgdal-dev
RUN sudo apt-get update && apt-get install -yq --no-install-recommends python3-gdal python3-numpy
RUN sudo apt-get update && apt-get install -yq --no-install-recommends xorg libx11-dev libglu1-mesa-dev libfreetype6-dev
RUN sudo add-apt-repository ppa:thomas-schiex/blender
RUN echo which gdal
......@@ -162,6 +161,7 @@ RUN apt-get update && apt-get install -yq --no-install-recommends \
# Install other CRAN
RUN Rscript -e 'install.packages(c("Seurat", "rJava", "umap", "bookdown", "cluster", "KernSmooth", "ROCR", "googleVis", "ggbeeswarm", "SLICER", "ggfortify", "mclust", "Rmagic", "DrImpute","Polychrome","future"))'
RUN sudo apt-get update && apt-get install -yq --no-install-recommends xorg libx11-dev libglu1-mesa-dev libfreetype6-dev
# Install Bioconductor packages
RUN Rscript -e 'BiocManager::install(c("graph", "RBGL", "gtools", "xtable", "pcaMethods", "limma", "SingleCellExperiment", "Rhdf5lib", "scater", "scran", "RUVSeq", "sva", "SC3", "TSCAN", "monocle", "destiny", "DESeq2", "edgeR", "MAST", "scmap", "biomaRt", "MultiAssayExperiment", "SummarizedExperiment","EnsDb.Mmusculus.v79","slingshot","scds"))'
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment