diff --git a/Dockerfile b/Dockerfile index a582ba2a65294fb191100221e9e0dd55da097ced..6b61659bb9c8b3d09ff3c3abac27fd9e90ee5a4e 100644 --- a/Dockerfile +++ b/Dockerfile @@ -15,7 +15,6 @@ RUN sudo add-apt-repository ppa:ubuntugis/ppa && sudo apt-get update #RUN sudo apt-get update && apt-get install -yq --no-install-recommends python3-pip python3-setuptools RUN sudo apt-get update && apt-get install -yq --no-install-recommends gdal-bin libgdal-dev RUN sudo apt-get update && apt-get install -yq --no-install-recommends python3-gdal python3-numpy -RUN sudo apt-get update && apt-get install -yq --no-install-recommends xorg libx11-dev libglu1-mesa-dev libfreetype6-dev RUN sudo add-apt-repository ppa:thomas-schiex/blender RUN echo which gdal @@ -162,6 +161,7 @@ RUN apt-get update && apt-get install -yq --no-install-recommends \ # Install other CRAN RUN Rscript -e 'install.packages(c("Seurat", "rJava", "umap", "bookdown", "cluster", "KernSmooth", "ROCR", "googleVis", "ggbeeswarm", "SLICER", "ggfortify", "mclust", "Rmagic", "DrImpute","Polychrome","future"))' +RUN sudo apt-get update && apt-get install -yq --no-install-recommends xorg libx11-dev libglu1-mesa-dev libfreetype6-dev # Install Bioconductor packages RUN Rscript -e 'BiocManager::install(c("graph", "RBGL", "gtools", "xtable", "pcaMethods", "limma", "SingleCellExperiment", "Rhdf5lib", "scater", "scran", "RUVSeq", "sva", "SC3", "TSCAN", "monocle", "destiny", "DESeq2", "edgeR", "MAST", "scmap", "biomaRt", "MultiAssayExperiment", "SummarizedExperiment","EnsDb.Mmusculus.v79","slingshot","scds"))'