Commit 2bf1d423 authored by Ruqian Lyu's avatar Ruqian Lyu
Browse files

update REAME

parent 86b23123
Pipeline #931 passed with stage
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......@@ -234,14 +234,6 @@ tar -xvf Tabula_Muris.tar.gz
mv mnt/mcfiles/Datasets/Tabula_Muris data
rm -r mnt
```
##### Case study dataset
The dataset we used in the case study is from (O’Koren et al), you can download
all the relevant files via [this link](https://www.svi.edu.au/MIG_2019_scRNAseq-workshop/case_study_data.tar.gz)
It includes the raw fastqs and processed count matrix data and is of size 2.1GB.
If you would like to start with the count matrix data, please follow the instruction in the [RMarkdown](https://gitlab.svi.edu.au/biocellgen-public/mig_2019_scrnaseq-workshop/blob/master/case_study_data/case_study.Rmd)
to download the processed count matrix data from GEO.
##### Desired results
......@@ -290,6 +282,14 @@ p│   └── FACS_metadata.csv
With the files in these locations, everything is set up to run the code as
presented in the RMarkdown files in the workshop.
##### Case study dataset
The dataset we used in the case study is from (O’Koren et al), you can download
all the relevant files via [this link](https://www.svi.edu.au/MIG_2019_scRNAseq-workshop/case_study_data.tar.gz)
It includes the raw fastqs and processed count matrix data and is of size 2.1GB.
If you would like to start with the count matrix data, please follow the instruction in the [RMarkdown](https://gitlab.svi.edu.au/biocellgen-public/mig_2019_scrnaseq-workshop/blob/master/case_study_data/case_study.Rmd)
to download the processed count matrix data from GEO.
### RStudio
......
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