From 2bf1d423dd8513fc694444a69426a3073c28c38b Mon Sep 17 00:00:00 2001 From: rlyu <rlyu@svi.edu.au> Date: Tue, 1 Oct 2019 17:23:47 +1000 Subject: [PATCH] update REAME --- README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 2b3bb8a..b0e8119 100644 --- a/README.md +++ b/README.md @@ -234,14 +234,6 @@ tar -xvf Tabula_Muris.tar.gz mv mnt/mcfiles/Datasets/Tabula_Muris data rm -r mnt ``` -##### Case study dataset - -The dataset we used in the case study is from (O’Koren et al), you can download -all the relevant files via [this link](https://www.svi.edu.au/MIG_2019_scRNAseq-workshop/case_study_data.tar.gz) - -It includes the raw fastqs and processed count matrix data and is of size 2.1GB. -If you would like to start with the count matrix data, please follow the instruction in the [RMarkdown](https://gitlab.svi.edu.au/biocellgen-public/mig_2019_scrnaseq-workshop/blob/master/case_study_data/case_study.Rmd) -to download the processed count matrix data from GEO. ##### Desired results @@ -290,6 +282,14 @@ p│  └── FACS_metadata.csv With the files in these locations, everything is set up to run the code as presented in the RMarkdown files in the workshop. +##### Case study dataset + +The dataset we used in the case study is from (O’Koren et al), you can download +all the relevant files via [this link](https://www.svi.edu.au/MIG_2019_scRNAseq-workshop/case_study_data.tar.gz) + +It includes the raw fastqs and processed count matrix data and is of size 2.1GB. +If you would like to start with the count matrix data, please follow the instruction in the [RMarkdown](https://gitlab.svi.edu.au/biocellgen-public/mig_2019_scrnaseq-workshop/blob/master/case_study_data/case_study.Rmd) +to download the processed count matrix data from GEO. ### RStudio -- GitLab