Commits · 8ad89fa9b982fff09d940d654046dbbd14cd13ec · BioCellGen-public / MAGE_2020_Marker-Gene-Benchmarking

Jan 19, 2022
- Update astrocyte data processing · 8ad89fa9
  Jeffrey Pullin authored 3 years ago
  
  8ad89fa9
Dec 22, 2021
- Add Cepo method · 34c53632
  Jeffrey Pullin authored 3 years ago
  
  34c53632
- Adjust initial cell2location data analysis · 2104e5cd
  Jeffrey Pullin authored 3 years ago
  
  2104e5cd
- Add SMART-seq3 PBMC data · 9c94f3f4
  Jeffrey Pullin authored 3 years ago
  
  9c94f3f4
- Add Zhao data · ff917a9f
  Jeffrey Pullin authored 3 years ago
  
  ff917a9f
Dec 21, 2021
- Add Paul data · b9e27944
  Jeffrey Pullin authored 3 years ago
  
  b9e27944
Dec 17, 2021
- Add the NSForest method · 0801a95b
  Jeffrey Pullin authored 3 years ago
  
  0801a95b
- Add beginnings of script to prepare the Zhao data · eb0f6e5b
  Jeffrey Pullin authored 3 years ago
  
  eb0f6e5b
Dec 10, 2021
- Add NSForest · 7f0bfa02
  Jeffrey Pullin authored 3 years ago
  
  7f0bfa02
Dec 07, 2021
- Add smash to method parameters · 293393ab
  Jeffrey Pullin authored 3 years ago
  
  293393ab
- Add smash · ef82bf36
  Jeffrey Pullin authored 3 years ago
  ef82bf36
- Add astrocyte data from the cell2location paper · 94470bb2
  Jeffrey Pullin authored 3 years ago
  
  94470bb2
Dec 06, 2021
- Update R and Snakemake versions in the Snakefile · afe7dd3a
  Jeffrey Pullin authored 3 years ago
  
  afe7dd3a
- Add rowData to pbmc3k and endothelial datasets · e4fdf78c
  Jeffrey Pullin authored 3 years ago
  e4fdf78c
- Update R and snakemake versions · 45f33749
  Jeffrey Pullin authored 3 years ago
  45f33749
- Add MAST to list of required R packages · 87fa7808
  Jeffrey Pullin authored 3 years ago
  
  87fa7808
- Add cli package to dependencies · 65c2b09e
  Jeffrey Pullin authored 3 years ago
  
  65c2b09e
Dec 03, 2021
- Add R package dependencies install script · 36070734
  Jeffrey Pullin authored 3 years ago
  
  36070734
Dec 01, 2021
- Tweak redirects · d1325f21
  Jeffrey Pullin authored 3 years ago
  
  d1325f21
- Move redirects file · 696ab624
  Jeffrey Pullin authored 3 years ago
  
  696ab624
- Add redirects file · 489531ee
  Jeffrey Pullin authored 3 years ago
  
  489531ee
Nov 29, 2021
- Various changes made in the last days before thesis submission · aca9ad2b
  Jeffrey Pullin authored 3 years ago
  aca9ad2b
- Add experiment with use of astrocyte (cell2location) data · b5e1cdc8
  Jeffrey Pullin authored 3 years ago
  
  b5e1cdc8
Sep 28, 2021
- Update analyses · 98c856a5
  Jeffrey Pullin authored 3 years ago
  
  98c856a5
- Adjust mean filter and remove ranking · effbb615
  Jeffrey Pullin authored 3 years ago
  
  effbb615
- Adjust plotting utils to new methods · 592e6ae8
  Jeffrey Pullin authored 3 years ago
  
  592e6ae8
- Properly name the new Scanpy methods · 4258eda8
  Jeffrey Pullin authored 3 years ago
  
  4258eda8
- Remove unneeded dataset id · db536a61
  Jeffrey Pullin authored 3 years ago
  
  db536a61
- Update time analyses · ddb1eeb5
  Jeffrey Pullin authored 3 years ago
  
  ddb1eeb5
- Update presto implementation to rank the returned genes · 4e358287
  Jeffrey Pullin authored 3 years ago
  
  4e358287
- Update methods for splitting time and general simulations · d1b672b5
  Jeffrey Pullin authored 3 years ago
  
  d1b672b5
Sep 26, 2021
- Update code to latest specification · b2b379c2
  Jeffrey Pullin authored 3 years ago
  b2b379c2
- Extend endothelial expert marker gene analysis · 3aec4066
  Jeffrey Pullin authored 3 years ago
  
  3aec4066
Sep 24, 2021
- Update the expert marker gene analysis for the endothelial data · 701b1d52
  Jeffrey Pullin authored 3 years ago
  
  701b1d52
- Remove unused output folder · 6adbbb03
  Jeffrey Pullin authored 3 years ago
  
  6adbbb03
- Remove unused resources directory · be994d60
  Jeffrey Pullin authored 3 years ago
  
  be994d60
- Remove (essentially) unused org directory · a0e1761e
  Jeffrey Pullin authored 3 years ago
  
  a0e1761e
- Remove unused references directory · 96a21b3d
  Jeffrey Pullin authored 3 years ago
  
  96a21b3d
- Remove notes folder · ee846cbc
  Jeffrey Pullin authored 3 years ago
  
  ee846cbc
- Add CCR7 pairwise and one-vs-rest plot · 998f026d
  Jeffrey Pullin authored 3 years ago
  
  998f026d