Add R package dependencies install script

code/install-r-package-deps.R

+# Script to install the R packages required by the project.
+
+install.packages("BiocManager")
+install.packages("remotes")
+
+r_package_dependencies <- c(
+  "rmarkdown", "workflowr", "knitr", "dplyr",
+  "ggplot2", "SingleCellExperiment", "tibble", "glue",
+  "here", "SeuratDisk", "zellkonverter", "purrr",
+  "janitor", "readr", "snakecase", "magrittr",
+  "ggrepel", "ggupset", "logisticPCA", "pals",
+  "patchwork", "tidyr", "topconfects", "Rtsne",
+  "countsimQC", "DESeq2", "scater",  "scran",
+  "Seurat", "readxl", "stringr", "forcats",
+  "viridis", "yaml", "AnnotationHub", "scRNAseq",
+  "presto", "sparseMatrixStats", "splatter", "TENxPBMCData",
+  "EnsDb.Hsapiens.v86", "igraph", "ROCR", "lubridate",
+  "tools", "stats", "khroma", "ggforce",
+  "MASS", "pheatmap", "jsonlite",
+  "R.utils", "AnnotationDbi", "edgeR", "glmGamPoi",
+  "limma", "multcomp", "reticulate"
+)
+
+BiocManager::install(r_package_dependencies)
+
+remotes::install_github("jeffreypullin/presto@delete-data")
+