Commits · 36070734ca4bb2324115d7f1d252fec2839d7b0a · BioCellGen-public / MAGE_2020_Marker-Gene-Benchmarking

Dec 03, 2021
- Add R package dependencies install script · 36070734
  Jeffrey Pullin authored 3 years ago
  
  36070734
Dec 01, 2021
- Tweak redirects · d1325f21
  Jeffrey Pullin authored 3 years ago
  
  d1325f21
- Move redirects file · 696ab624
  Jeffrey Pullin authored 3 years ago
  
  696ab624
- Add redirects file · 489531ee
  Jeffrey Pullin authored 3 years ago
  
  489531ee
Nov 29, 2021
- Various changes made in the last days before thesis submission · aca9ad2b
  Jeffrey Pullin authored 3 years ago
  aca9ad2b
- Add experiment with use of astrocyte (cell2location) data · b5e1cdc8
  Jeffrey Pullin authored 3 years ago
  
  b5e1cdc8
Sep 28, 2021
- Update analyses · 98c856a5
  Jeffrey Pullin authored 3 years ago
  
  98c856a5
- Adjust mean filter and remove ranking · effbb615
  Jeffrey Pullin authored 3 years ago
  
  effbb615
- Adjust plotting utils to new methods · 592e6ae8
  Jeffrey Pullin authored 3 years ago
  
  592e6ae8
- Properly name the new Scanpy methods · 4258eda8
  Jeffrey Pullin authored 3 years ago
  
  4258eda8
- Remove unneeded dataset id · db536a61
  Jeffrey Pullin authored 3 years ago
  
  db536a61
- Update time analyses · ddb1eeb5
  Jeffrey Pullin authored 3 years ago
  
  ddb1eeb5
- Update presto implementation to rank the returned genes · 4e358287
  Jeffrey Pullin authored 3 years ago
  
  4e358287
- Update methods for splitting time and general simulations · d1b672b5
  Jeffrey Pullin authored 3 years ago
  
  d1b672b5
Sep 26, 2021
- Update code to latest specification · b2b379c2
  Jeffrey Pullin authored 3 years ago
  b2b379c2
- Extend endothelial expert marker gene analysis · 3aec4066
  Jeffrey Pullin authored 3 years ago
  
  3aec4066
Sep 24, 2021
- Update the expert marker gene analysis for the endothelial data · 701b1d52
  Jeffrey Pullin authored 3 years ago
  
  701b1d52
- Remove unused output folder · 6adbbb03
  Jeffrey Pullin authored 3 years ago
  
  6adbbb03
- Remove unused resources directory · be994d60
  Jeffrey Pullin authored 3 years ago
  
  be994d60
- Remove (essentially) unused org directory · a0e1761e
  Jeffrey Pullin authored 3 years ago
  
  a0e1761e
- Remove unused references directory · 96a21b3d
  Jeffrey Pullin authored 3 years ago
  
  96a21b3d
- Remove notes folder · ee846cbc
  Jeffrey Pullin authored 3 years ago
  
  ee846cbc
- Add CCR7 pairwise and one-vs-rest plot · 998f026d
  Jeffrey Pullin authored 3 years ago
  
  998f026d
- Rename welch ranking analysis file · 4e1c3327
  Jeffrey Pullin authored 3 years ago
  
  4e1c3327
- Delete old zero p-values analysis file · 5854a31a
  Jeffrey Pullin authored 3 years ago
  
  5854a31a
Sep 23, 2021
- Polish analyses · d3804d15
  Jeffrey Pullin authored 3 years ago
  d3804d15
- Add Welch t-tet analysis · f30d562c
  Jeffrey Pullin authored 3 years ago
  
  f30d562c
- Add zero p-values analysis · 729a4912
  Jeffrey Pullin authored 3 years ago
  
  729a4912
- Add scran-any case study · 961a939b
  Jeffrey Pullin authored 3 years ago
  
  961a939b
Sep 22, 2021
- Polish pbmc3k marker gene analysis · aab8bbb1
  Jeffrey Pullin authored 3 years ago
  
  aab8bbb1
- Polish time plots · 16c471e8
  Jeffrey Pullin authored 3 years ago
  
  16c471e8
- Polish tpr analysis · e3d9f9e6
  Jeffrey Pullin authored 3 years ago
  
  e3d9f9e6
- Add double dipping analysis · c37218ff
  Jeffrey Pullin authored 3 years ago
  
  c37218ff
Sep 21, 2021
- Add new single cell databases analysis · 305c0a51
  Jeffrey Pullin authored 3 years ago
  
  305c0a51
- Add p-value analysis · d1445fc3
  Jeffrey Pullin authored 3 years ago
  
  d1445fc3
- Polish direction selected analysis · e0d02625
  Jeffrey Pullin authored 3 years ago
  
  e0d02625
- Polish concordance analysis · b5205872
  Jeffrey Pullin authored 3 years ago
  
  b5205872
- Add .pdf to .gitignore · 59cc026a
  Jeffrey Pullin authored 3 years ago
  
  59cc026a
- Lengthen longest time · 3a2ebf4a
  Jeffrey Pullin authored 3 years ago
  
  3a2ebf4a
- Extend classical robustness case study · 45539ea1
  Jeffrey Pullin authored 3 years ago
  
  45539ea1