update slurm script

submit-wgetSRAFastqdump.sh

@@ -3,7 +3,7 @@
 #SBATCH --ntasks=8
 #SBATCH --time=100:15:00
 #SBATCH --mem=8048
-#SBATCH --array=46-63%1
+#SBATCH --array=1-219%5
 #SBATCH --output=fastqDumper%A_%a.out
 #SBATCH --partition=primary
 
@@ -11,12 +11,14 @@ echo "SLURM_JOBID: " $SLURM_JOBID
 echo "SLURM_ARRAY_TASK_ID: " $SLURM_ARRAY_TASK_ID
 echo "SLURM_ARRAY_JOB_ID: " $SLURM_ARRAY_JOB_ID
 
-scc=$(cat srr_failed.txt | sed -n ${SLURM_ARRAY_TASK_ID}"p")
+scc=$(cat SRR_Acc_List_hinch.txt | sed -n ${SLURM_ARRAY_TASK_ID}"p")
 
 echo $scc
 
-#mkdir $scc
+mkdir data/$scc
+
+wget --output-document=${scc}/${scc}.sra https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/${scc}/${scc}.1
+
+mv ${scc}/${scc}.sra ${scc}/${scc}
 
-#wget --output-document=${scc}/${scc}.sra https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/${scc}/${scc}.1
-#mv ${scc}/${scc}.sra ${scc}/${scc}
 fasterq-dump --split-files --outdir data/${scc}/ --threads 8 ${scc}/${scc}