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The mice are from what is referred to as a "BC1F1" generation: More specifically previously two inbred mice were crossed from the strains C57BL6 and FVB. The resulting F1 mice were then backcrossed to an FVB inbred, which resulted in the "BC1F1" mice. It is these BC1F1 mice that were sequenced.
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The fastq files, a list of variants, and metadata can be downloaded [here](https://stvincentsinstitute.sharepoint.com/:f:/s/CrismaniData/Ehr5NSEOV-BFl4dWgq8bKrsBmYjCbAlQbDOsEZ9MFFD_Kw?e=vWD06P). (*please note this data is currently being uploaded and should be complete by Thursday morning 3/11/22. The data can be seen as it is uploaded in real time)
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The fastq files, a list of variants, and metadata can be downloaded [here](https://stvincentsinstitute.sharepoint.com/:f:/s/CrismaniData/Ehr5NSEOV-BFl4dWgq8bKrsBmYjCbAlQbDOsEZ9MFFD_Kw?e=vWD06P).
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Fastq files for five mice are provided. Whole genome coverage may be in the range from 1-5x. If this level of coverage is expected to be problematic, please let me know.
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<span dir="">This task is not meant to be unpleasant or overly onerous. We only expect you to spend 1-2 hours working on it. If you find yourself stuck, feel free to reach out to Wayne for some pointers.</span>
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Please send the report to wcrismani@svi.edu.au no later than 4pm the day before your interview.
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Please send the report to wcrismani@svi.edu.au no later than 4pm the day before your interview. |
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