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Lucy McNeill
synapsis
Commits
5dda3c25
Commit
5dda3c25
authored
Jul 13, 2021
by
Lucy McNeill
Browse files
update README front page to reflect function names
parent
a3ab0b71
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vignettes/README.md
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...
...
@@ -34,7 +34,7 @@ foci_counts <- count_foci(path,offset_factor = 5, brush_size = 1, brush_sigma =
and
```
r
df_dist
<-
measure_distances
(
path
,
offset_factor
=
5
,
brush_size
=
1
,
brush_sigma
=
1
,
annotation
=
"on"
,
WT_out
=
"Fancm+/+"
,
KO_out
=
"Fancm-/-"
,
stage
=
"pachytene"
)
df_dist
<-
measure_distances
_general
(
path
,
offset_factor
=
5
,
brush_size
=
1
,
brush_sigma
=
1
,
annotation
=
"on"
,
WT_out
=
"Fancm+/+"
,
KO_out
=
"Fancm-/-"
,
stage
=
"pachytene"
)
```
otherwise, for everything else, you could call something like:
...
...
@@ -45,5 +45,5 @@ foci_counts <- count_foci(path,offset_factor = 5, brush_size = 1, brush_sigma =
and
```
r
df_dist
<-
measure_distances
(
path
,
offset_factor
=
5
,
brush_size
=
1
,
brush_sigma
=
1
,
annotation
=
"on"
,
WT_str
=
"tif"
,
WT_out
=
"NA"
,
file_ext
=
"tif"
,
channel2_string
=
"c3"
,
channel1_string
=
"c2"
,
offset_px
=
0.4
,
crowded_foci
=
TRUE
)
df_dist
<-
measure_distances
_general
(
path
,
offset_factor
=
5
,
brush_size
=
1
,
brush_sigma
=
1
,
annotation
=
"on"
,
WT_str
=
"tif"
,
WT_out
=
"NA"
,
file_ext
=
"tif"
,
channel2_string
=
"c3"
,
channel1_string
=
"c2"
,
offset_px
=
0.4
,
crowded_foci
=
TRUE
)
```
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