The static bianry can be simply downloaded which works for GNU/Linux type OS: `./src/sscocaller`
The static build was generated by using docker image docker://svirlyu/sscocaller_nsb adapted from https://github.com/brentp/hts-nim/blob/master/Dockerfile
Then, `sscocaller` can be installed using `nimble`
A static binary build of `sscocaller` is available as downloadable artifacts at gitlab repo: "https://gitlab.svi.edu.au/biocellgen-public/sscocaller" or via
`sscocaller` is available as a conda package and can be [](http://bioconda.github.io/recipes/sscocaller/README.html)
### Using docker
...
...
@@ -110,21 +108,26 @@ docker run -it svirlyu/sscocaller
/usr/bin/sscocaller -h
```
### Install with nimble
`sscocaller` uses `hts-nim`(https://github.com/brentp/hts-nim) that requires the `hts-lib` library. If you are building the `sscocaller` from
The static bianry can be simply downloaded which works for GNU/Linux type OS: `./src/sscocaller`
cd ..
make -j 4 -C htslib
export LD_LIBRARY_PATH=$HOME/htslib
ls -lh $HOME/htslib/*.so
```
The static build was generated by using docker image docker://svirlyu/sscocaller_nsb adapted from https://github.com/brentp/hts-nim/blob/master/Dockerfile
Then, `sscocaller` can be installed using `nimble`
The built package is located at $HOME/.nimble/bin/sscocaller
A static binary build of `sscocaller` is available as downloadable artifacts at gitlab repo: "https://gitlab.svi.edu.au/biocellgen-public/sscocaller" or via