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Created with Raphaël 2.2.04Feb30Jan2822212013Dec29Oct2320181611109126Sep241917929Aug2221201413817Jul161113Jun6546May218Apr171515Jan6Dec17Nov230Oct292237Sep6330Aug201627Jun20122May30Apr251918131227Mar31Jan30323Nov22212030Oct1312542129Sep138714Aug20Jul1674322Jun2026May25262415128Apr24231428Mar2725added vcf and gff example dataupdate to use vcf and gff object instead of pathupdate to use vcf and gff object instead of pathupdate from remoteupdate from remoteupdate wordlistupdate wordlistfixed nGroups not found bugfixed nGroups not found bugadded eQTL functions to manual sectionadded eQTL functions to manual sectionremoved weird HEADER tags in vig rmd filesremoved weird HEADER tags in vig rmd filesMerge branch 'Oshlack-master'Merge branch 'Oshlack-master'checkout some vignettes and manualscheckout some vignettes and manualsworking version of splateQTLworking version of splateQTLUpdate scater functions in vignetteUpdate scater functions in vignetteremoved VignetteBuilider: knitrremoved VignetteBuilider: knitrremove cache packagesremove cache packagesskill installskill installadded addons stuff for magickadded addons stuff for magickremoved knitrremoved knitrignore eqtl_outignore eqtl_outreset travis yml to original used by oshlackreset travis yml to original used by oshlackfirst splat-eqtl commitfirst splat-eqtl commitskip vignette checkskip vignette checkremove knitr install from travis.yml