Commits · fd6285fbec0717b3ce91c7c7a74a452c7eab36a9 · BioCellGen-public / sirplus

Apr 16, 2020
- merge my and puxues mods · fd6285fb
  Christina Azodi authored 4 years ago
  
  fd6285fb
- updated to include plotting CIs known and by compartment · 0735160e
  Christina Azodi authored 4 years ago
  
  0735160e
Apr 15, 2020
- Distinguish default and user passed parameters · 33e65b13
  pqiao29 authored 4 years ago
  
  33e65b13
- add print.summary · c6fb1798
  pqiao29 authored 4 years ago
  
  c6fb1798
- add plot(method = weekly_local) · 6f93922a
  pqiao29 authored 4 years ago
  
  6f93922a
- remove set_param · e9099e5d
  pqiao29 authored 4 years ago
  
  e9099e5d
Apr 13, 2020
- S3 methods in progress: summary, plot (times, models) · 0ec19e81
  pqiao29 authored 4 years ago
  
  0ec19e81
Apr 12, 2020

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf,... · 1347a149

pqiao29 authored 4 years ago

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf, as.data.frame.seiqhrf, print(control, init, param, model), usage in vignette v2

1347a149

Apr 08, 2020
- add quantile 95% CI in summary · 3dc7a609
  pqiao29 authored 4 years ago
  
  3dc7a609
- clear function names: icm.seiqhrf -> seiqhrf · 29f9599f
  pqiao29 authored 4 years ago
  
  29f9599f
- clear function names: control.icm -> control_seiqhrf · 4259cd14
  pqiao29 authored 4 years ago
  
  4259cd14
- debug summary · 8f3cfa91
  pqiao29 authored 4 years ago
  
  8f3cfa91
Apr 07, 2020
- add summary_seiqhrf · 457cde42
  pqiao29 authored 4 years ago
  
  457cde42
Apr 06, 2020
- make default values consistent with previous version · 0bc5ac41
  pqiao29 authored 4 years ago
  
  0bc5ac41
- add from E to R: arec.rand, arec.rate, arec.dist.shape, arec.dist.scale · 326ed0c3
  pqiao29 authored 4 years ago
  
  326ed0c3
- Merge branch 'master' of https://gitlab.svi.edu.au/biocellgen-private/sirplus · 88cbe98f
  pqiao29 authored 4 years ago
  
  88cbe98f
- clear structure of update status, allow .rand to be FALSE for all steps in recovery.FUN · 396a5150
  pqiao29 authored 4 years ago
  
  396a5150
Apr 03, 2020
- fix bug with plotting known counts in all experiment facets · 59ce9768
  Christina Azodi authored 4 years ago
  
  59ce9768
- fix bug with plotting known counts in all experiment facets · 2a9909ff
  Christina Azodi authored 4 years ago
  
  2a9909ff
- remove redundant code · e1420e76
  pqiao29 authored 4 years ago
  
  e1420e76
- Merge branch 'master' of https://gitlab.svi.edu.au/biocellgen-private/sirplus · 685ac332
  pqiao29 authored 4 years ago
  
  685ac332
- trivial change · 4773f2a6
  pqiao29 authored 4 years ago
  
  4773f2a6
- exported new functions by cba · 27150f9c
  Christina Azodi authored 4 years ago
  
  27150f9c
- add code for setting up time sensitive experiments where parameter values change over time · 8c43df6e
  Christina Azodi authored 4 years ago
  
  8c43df6e
- add code for setting up time sensitive experiments where parameter values change over time · 96ab8263
  Christina Azodi authored 4 years ago
  
  96ab8263
- minor change in document · 582c5c94
  pqiao29 authored 4 years ago
  
  582c5c94
- confirm all changed functions return identical values as the originals · ceaa6b8a
  pqiao29 authored 4 years ago
  
  ceaa6b8a
Apr 01, 2020
- finish clean up arrivals.FUN · 78e69880
  pqiao29 authored 4 years ago
  
  78e69880
- organize file names · dcc95e1b
  pqiao29 authored 4 years ago
  
  dcc95e1b
- departure.FUN · bbb0370c
  pqiao29 authored 4 years ago
  
  bbb0370c
- finish clean up departures.FUN · 7eb6ff39
  pqiao29 authored 4 years ago
  
  7eb6ff39
Mar 31, 2020
- finish clean up recovery.FUN · 4323e407
  pqiao29 authored 4 years ago
  
  4323e407
- get rid of <<- · 6bc64cf5
  pqiao29 authored 4 years ago
  
  6bc64cf5
- debug · 52ab104d
  pqiao29 authored 4 years ago
  
  52ab104d
Mar 30, 2020
- clean up recovery.FUN: till line 117 in revised (recovery.FUN) and line 192 in... · e97db92d
  pqiao29 authored 4 years ago
  
  clean up recovery.FUN: till line 117 in revised (recovery.FUN) and line 192 in original (progress.seiqhrf.icm)
  e97db92d
- clean up initialize.FUN · c65408da
  pqiao29 authored 4 years ago
  
  c65408da
Mar 29, 2020
- Fixing description and docs · 01f9c99c
  Davis McCarthy authored 4 years ago
  
  01f9c99c
Mar 27, 2020
- fix conflict · d6702c9f
  pqiao29 authored 4 years ago
  
  d6702c9f
- fix devtools::check() · ec061b4a
  pqiao29 authored 4 years ago
  
  ec061b4a
- Add testthat: infection.FUN returns identical output as Churches' infection.seiqhrf.icm · 2d04bb00
  pqiao29 authored 4 years ago
  
  2d04bb00