Commits · e0017803dd772ecfd0fa71bc491bfa6a19b0ba3f · BioCellGen-public / sirplus

Oct 04, 2017
- Add ZINBParams · e0017803
  Luke Zappia authored 7 years ago
  
  e0017803
- Merge branch 'pheno' · 2cc9f32b
  Luke Zappia authored 7 years ago
  
  * pheno: Add pheno to lists Add phenoEstimate Add phenoSimulate Add PhenoParams Fix quotes bug in tests
  2cc9f32b
- Add pheno to lists · aa3d2663
  Luke Zappia authored 7 years ago
  
  aa3d2663
- Add phenoEstimate · 3ae99172
  Luke Zappia authored 7 years ago
  
  3ae99172
- Add phenoSimulate · 6f488ee2
  Luke Zappia authored 7 years ago
  
  6f488ee2
- Add PhenoParams · aae77a9c
  Luke Zappia authored 7 years ago
  
  aae77a9c
- Merge branch 'setup' into pheno · b4e0f76f
  Luke Zappia authored 7 years ago
  
  * setup: Fix quotes bug in tests
  b4e0f76f
- Fix quotes bug in tests · 22e3512d
  Luke Zappia authored 7 years ago
  
  22e3512d
Oct 02, 2017
- Merge branch 'master' into setup · 6fd0429b
  Luke Zappia authored 7 years ago
  
  * master: Bump version
  6fd0429b
- Bump version · 128468c8
  Luke Zappia authored 7 years ago
  
  View commits for tag v1.1.6 v1.1.6
  
  128468c8
- Merge branch 'mfa' · 0b633ea0
  Luke Zappia authored 7 years ago
  
  * mfa: Add mfa tests Add mfa to lists Add mfaSimulate Add mfaEstimate Add MFAParams
  0b633ea0
- Merge branch 'scDD-update' · b90aea28
  Luke Zappia authored 7 years ago
  
  * scDD-update: Run checks Update scDDEstimate Update SCDDParams Update scDDSimulate
  b90aea28
Oct 01, 2017
- Add mfa tests · 114a5aad
  Luke Zappia authored 7 years ago
  
  114a5aad
- Run checks · 5e63dfce
  Luke Zappia authored 7 years ago
  
  5e63dfce
- Add mfa to lists · dbac87de
  Luke Zappia authored 7 years ago
  
  dbac87de
- Add mfaSimulate · dd3df053
  Luke Zappia authored 7 years ago
  
  dd3df053
- Add mfaEstimate · 712fe45c
  Luke Zappia authored 7 years ago
  
  712fe45c
Sep 29, 2017
- Add MFAParams · d173ae09
  Luke Zappia authored 7 years ago
  
  d173ae09
- Update scDDEstimate · cfbad4d5
  Luke Zappia authored 7 years ago
  
  cfbad4d5
- Update SCDDParams · 31fb64a3
  Luke Zappia authored 7 years ago
  
  31fb64a3
- Update scDDSimulate · f2f4f84f
  Luke Zappia authored 7 years ago
  
  f2f4f84f
Sep 13, 2017
- Merge branch 'SCE' · 4d70c34c
  Luke Zappia authored 7 years ago
  
  * SCE: Build pkgdown Run checks Update README Update vignette to SCE Fix error in simulating batches Switch to BiocGenerics::counts Update SCE and comparison functions Fix accessing counts Update simulation documentation Convert simulations to SingleCellExperiment
  View commits for tag v1.1.5 v1.1.5
  
  4d70c34c
- Build pkgdown · 9e68748f
  Luke Zappia authored 7 years ago
  
  9e68748f
- Run checks · bce9b2ce
  Luke Zappia authored 7 years ago
  
  bce9b2ce
- Update README · e27d2a0c
  Luke Zappia authored 7 years ago
  
  e27d2a0c
- Update vignette to SCE · 16f30d17
  Luke Zappia authored 7 years ago
  
  16f30d17
- Fix error in simulating batches · 7724df73
  Luke Zappia authored 7 years ago
  
  Problem using factor to index matrix
  7724df73
Sep 08, 2017
- Switch to BiocGenerics::counts · 779ff32f
  Luke Zappia authored 7 years ago
  
  779ff32f
Sep 07, 2017
- Update SCE and comparison functions · 81ed90d1
  Luke Zappia authored 7 years ago
  
  81ed90d1
- Fix accessing counts · a8351690
  Luke Zappia authored 7 years ago
  
  a8351690
- Update simulation documentation · e1de64de
  Luke Zappia authored 7 years ago
  
  e1de64de
- Convert simulations to SingleCellExperiment · 572667ad
  Luke Zappia authored 7 years ago
  
  572667ad
Sep 01, 2017

Merge remote-tracking branch 'upstream/master' · cc557e59

Luke Zappia authored 7 years ago

* upstream/master:
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  bump x.y.z versions to odd y after creation of 3_5 branch
  bump x.y.z versions to even y prior to creation of 3_5 branch
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Merge branch 'master' into devel
  Adding goSTAG, splatter, karyoploteR, discordant, POST, MCbiclust

cc557e59

Aug 04, 2017
- Merge branch 'master' of github.com:Oshlack/splatter · 9aea6a1c
  Luke Zappia authored 7 years ago
  
  * 'master' of github.com:Oshlack/splatter:
  9aea6a1c
- Merge pull request #20 from Oshlack/pkgdown · f411f33c
  Luke Zappia authored 7 years ago
  
  Add pkgdown site
  f411f33c
- Merge branch 'pkgdown' · f6e38eff
  Luke Zappia authored 7 years ago
  
  * pkgdown: Add extra.css Add index.md Add reference index Add _pkgdown.yml Add basic site
  f6e38eff
- Add extra.css · 789fd9fc
  Luke Zappia authored 7 years ago
  
  789fd9fc
- Add index.md · 1cb24343
  Luke Zappia authored 7 years ago
  
  1cb24343
- Add reference index · 0482751b
  Luke Zappia authored 7 years ago
  
  0482751b
- Add _pkgdown.yml · b031fe22
  Luke Zappia authored 7 years ago
  
  b031fe22