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- Jul 16, 2017
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Luke Zappia authored
* Add MAE, RMSE * Add scaled stats * Add ranks * Only return long table
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- Jul 07, 2017
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Luke Zappia authored
* devel: bump x.y.z versions to odd y after creation of 3_5 branch bump x.y.z versions to even y prior to creation of 3_5 branch Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel
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l.zappia authored
* master: (183 commits) Run checks Add batch effects to vignette Update splatEstimate to set batchCells Add batch effects to splatSimulate Update SplatParams Bump version number Update citation Fix error handling when fitting means Fix comparison plots Bioconductor 3.5 release bump x.y.z versions to odd y after creation of 3_5 branch Creating branch for BioC 3.5 release bump x.y.z versions to even y prior to creation of 3_5 branch Update NEWS and DESCRIPTION Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function ... From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131029 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
* batches: Run checks Add batch effects to vignette Update splatEstimate to set batchCells Add batch effects to splatSimulate Update SplatParams
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- Jul 04, 2017
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
* Add batch parameters * Replace groupCells with group.prob
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- May 26, 2017
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Luke Zappia authored
* release-3.5:
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l.zappia authored
* master: Bump version number From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129893 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
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- May 24, 2017
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Luke Zappia authored
* release-3.5:
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l.zappia authored
* master: Update citation From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129821 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
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- May 15, 2017
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Luke Zappia authored
* release-3.5:
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l.zappia authored
* master: Fix error handling when fitting means From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129584 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
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- Apr 28, 2017
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Luke Zappia authored
* release-3.5: Creating branch for BioC 3.5 release
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l.zappia authored
* master: (175 commits) Fix comparison plots Bioconductor 3.5 release bump x.y.z versions to odd y after creation of 3_5 branch bump x.y.z versions to even y prior to creation of 3_5 branch Update NEWS and DESCRIPTION Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function Version 0.99.14 Add panel function to vignette Change var plot scale Run checks Update panel functions Add makeOverallPanel function Add makeDiffPanel function Add options to comparison plots Version 0.99.13 ... From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129246 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
* devel: bump x.y.z versions to odd y after creation of 3_5 branch bump x.y.z versions to even y prior to creation of 3_5 branch
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Luke Zappia authored
* Fix scale in zeros diff plots * Fix diff plot colours * Fix panel legends
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- Apr 25, 2017
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hpages@fhcrc.org authored
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@129129 bc3139a8-67e5-0310-9ffc-ced21a209358
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hpages@fhcrc.org authored
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@129129 bc3139a8-67e5-0310-9ffc-ced21a209358
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hpages@fhcrc.org authored
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129128 bc3139a8-67e5-0310-9ffc-ced21a209358
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hpages@fhcrc.org authored
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@129126 bc3139a8-67e5-0310-9ffc-ced21a209358
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hpages@fhcrc.org authored
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@129126 bc3139a8-67e5-0310-9ffc-ced21a209358
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- Apr 23, 2017
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Luke Zappia authored
* devel:
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l.zappia authored
* master: Update NEWS and DESCRIPTION From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@129048 bc3139a8-67e5-0310-9ffc-ced21a209358
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l.zappia authored
* master: Update NEWS and DESCRIPTION From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@129048 bc3139a8-67e5-0310-9ffc-ced21a209358
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- Apr 14, 2017
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Luke Zappia authored
* devel:
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l.zappia authored
* master: Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@128698 bc3139a8-67e5-0310-9ffc-ced21a209358
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l.zappia authored
* master: Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@128698 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
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Luke Zappia authored
* MAD: Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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