Commits · cb68cd74752e5ef1d9dedbf7f99c3ab0d8121726 · BioCellGen-public / sirplus

Jun 12, 2018
- Fix errors in splatEstLib normality test · cb68cd74
  Luke Zappia authored 6 years ago
  
  Fixes #48
  cb68cd74
May 02, 2018
- Bump bioc devel version · 0ca7f716
  Luke Zappia authored 6 years ago
  
  0ca7f716
- Bump bioc release version · 582932aa
  Luke Zappia authored 6 years ago
  
  582932aa
May 01, 2018
- bump x.y.z versions to odd y after creation of RELEASE_3_7 branch · bc1dae7c
  vobencha authored 6 years ago
  
  bc1dae7c
- bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch · 4323a092
  vobencha authored 6 years ago
  
  4323a092
Apr 30, 2018
- Set seed in sparseDCEstimate tests and bump ver · cd579979
  Luke Zappia authored 6 years ago
  
  These would sometimes error due to sampling of example dataset
  cd579979
Apr 25, 2018
- Bump version to 1.3.5 · 83538788
  Luke Zappia authored 6 years ago
  
  83538788
Apr 19, 2018
- Bump version number · cf9de67f
  Luke Zappia authored 6 years ago
  
  cf9de67f
- Add SparseDCParams · 97160948
  Luke Zappia authored 6 years ago
  
  97160948
Apr 18, 2018
- Colourise Params print output · 5a451efc
  Luke Zappia authored 6 years ago
  
  crayon is the best!
  5a451efc
Apr 13, 2018
- Run checks · 78dc86d0
  Luke Zappia authored 6 years ago
  
  78dc86d0
- Use development version · b08710fa
  Luke Zappia authored 6 years ago
  
  b08710fa
- Add ORCIDs · c75f5d03
  Luke Zappia authored 6 years ago
  
  c75f5d03
Apr 12, 2018
- Use development version · a0d28da6
  Luke Zappia authored 6 years ago
  
  a0d28da6
Mar 27, 2018
- Fix parameter passing bug in scDDEstimate · 4316f594
  Luke Zappia authored 7 years ago
  
  4316f594
Jan 31, 2018
- Bump version number · d23acde1
  Luke Zappia authored 7 years ago
  
  d23acde1
Jan 30, 2018
- Move scater to imports · 74940a18
  Luke Zappia authored 7 years ago
  
  74940a18
- Add scater version to DESCRIPTION · 62384637
  Luke Zappia authored 7 years ago
  
  62384637
Jan 03, 2018
- Fix vignette error · 58c3ce15
  Luke Zappia authored 7 years ago
  
  58c3ce15
Nov 23, 2017
- Bump version number · 07201f3c
  Luke Zappia authored 7 years ago
  
  07201f3c
Nov 22, 2017
- moving zinbwave to suggests and removing apt installation of gsl · bdebd326
  Robrecht Cannoodt authored 7 years ago
  
  bdebd326
Nov 20, 2017
- Add zimbwave to imports · 25540a98
  Wouter Saelens authored 7 years ago
  
  25540a98
Oct 31, 2017
- bump x.y.z versions to odd y after creation of RELEASE_3_6 branch · 7cde9d7f
  Hervé Pagès authored 7 years ago
  
  7cde9d7f
- bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch · ade2c91d
  Hervé Pagès authored 7 years ago
  
  ade2c91d
Oct 13, 2017
- Version 1.1.8 · 0ab62753
  Luke Zappia authored 7 years ago
  
  View commits for tag v1.1.8 v1.1.8
  
  0ab62753
- Run checks · f5da0def
  Luke Zappia authored 7 years ago
  
  f5da0def
Oct 05, 2017
- Run checks and bump version · 2a0f5fce
  Luke Zappia authored 7 years ago
  
  View commits for tag v1.1.7 v1.1.7
  
  2a0f5fce
Oct 04, 2017
- Add ZINBParams · e0017803
  Luke Zappia authored 7 years ago
  
  e0017803
- Add PhenoParams · aae77a9c
  Luke Zappia authored 7 years ago
  
  aae77a9c
Oct 02, 2017
- Bump version · 128468c8
  Luke Zappia authored 7 years ago
  
  View commits for tag v1.1.6 v1.1.6
  
  128468c8
Sep 29, 2017
- Add MFAParams · d173ae09
  Luke Zappia authored 7 years ago
  
  d173ae09
Sep 13, 2017
- Run checks · bce9b2ce
  Luke Zappia authored 7 years ago
  
  bce9b2ce
Aug 04, 2017

Merge branch 'master' into devel · 61e88c6e

Luke Zappia authored 7 years ago

* master:
  Fix group factors bug

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131740 bc3139a8-67e5-0310-9ffc-ced21a209358

61e88c6e

Fix group factors bug · e5402c4c
Luke Zappia authored 7 years ago

e5402c4c

Jul 20, 2017

Merge branch 'master' into devel · 94be54a8

Luke Zappia authored 7 years ago

* master:
  Change mean-dropout to mean-zeros
  Add verbose to scDDEstimate

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131415 bc3139a8-67e5-0310-9ffc-ced21a209358

94be54a8

Jul 16, 2017

Merge branch 'master' into devel · 8b98f4ac

Luke Zappia authored 7 years ago

* master:
  Bump version number
  Run checks
  Patch fix to lun2Estimate from basics branch
  Update summariseDiff
  Add counts check to scDDEstimate
  Adjust nEE/nEP estimation
  Update scDD estimation

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131258 bc3139a8-67e5-0310-9ffc-ced21a209358

8b98f4ac

Bump version number · 4ca8887e
Luke Zappia authored 7 years ago

View commits for tag v1.1.2 v1.1.2

4ca8887e
Run checks · 3d397088
Luke Zappia authored 7 years ago
```
Import SummarizedExperiment to avoid warnings
```
3d397088

Jul 07, 2017
- Fix lun2Estimate error · c05c76a6
  Luke Zappia authored 7 years ago
  
  Error when scran::computeSumFactors returns negative values
  c05c76a6
- Fix lun2Estimate error · 91feb74f
  Luke Zappia authored 7 years ago
  
  Error when scran::computeSumFactors returns negative values
  91feb74f