Commits · bfeff80adde04b1e418a3cc528bc061b5691aeec · BioCellGen-public / sirplus

Feb 04, 2020
- update from remote · bfeff80a
  Christina Azodi authored 5 years ago
  
  bfeff80a
Jan 31, 2020
- Update scater functions in vignette · 083be7cc
  Luke Zappia authored 5 years ago
  
  083be7cc
Jan 28, 2020
- removed VignetteBuilider: knitr · 4bce1595
  Christina Azodi authored 5 years ago
  
  4bce1595
- skill install · c67e54c2
  Christina Azodi authored 5 years ago
  
  c67e54c2
- removed knitr · 0220696f
  Christina Azodi authored 5 years ago
  
  0220696f
Jan 22, 2020
- made Renviron file to store package locations · ddb7fbd0
  Christina Azodi authored 5 years ago
  
  ddb7fbd0
Jan 21, 2020
- added dplyr to suggests · c389d382
  Christina Azodi authored 5 years ago
  
  c389d382
- moved knitr to imports · af314255
  Christina Azodi authored 5 years ago
  
  af314255
- added knitr to suggests · ed3b73db
  Christina Azodi authored 5 years ago
  
  ed3b73db
Dec 13, 2019
- Bioconductor 3.11 devel · c299ff26
  Luke Zappia authored 5 years ago
  
  View commits for tag v1.11.0 v1.11.0
  
  c299ff26
- Bioconductor 3.10 release · f6f9dc26
  Luke Zappia authored 5 years ago
  
  View commits for tag v1.10.0 v1.10.0
  
  f6f9dc26
Oct 30, 2019
- bump x.y.z version to odd y after creation of RELEASE_3_10 branch · 2f8a20f4
  Nitesh Turaga authored 5 years ago
  
  2f8a20f4
- bump x.y.z version to even y prior to creation of RELEASE_3_10 branch · 775e6269
  Nitesh Turaga authored 5 years ago
  
  775e6269
Oct 24, 2019
- Fix NEWS file format · 67e74e51
  lshep authored 5 years ago
  
  - missing end of section header
  67e74e51
Oct 20, 2019
- Update NEWS.Rd · 4175e54e
  Luke Zappia authored 5 years ago
  
  4175e54e
- Update DESCRIPTION, NEWS for scater QC funcs · 645326d8
  Luke Zappia authored 5 years ago
  
  645326d8
Oct 19, 2019
- addPer*QC() functions were renamed in scater 1.13.27 · 90c5a7b6
  Hervé Pagès authored 5 years ago
  
  90c5a7b6
Oct 16, 2019
- Bump version number · 61e2a4fc
  Luke Zappia authored 5 years ago
  
  61e2a4fc
- Update maintainer email · 9679a722
  Luke Zappia authored 5 years ago
  
  9679a722
Oct 11, 2019
- Check for counts assay when estimating from SCE · 2258278e
  Luke Zappia authored 5 years ago
  
  Fixes #82
  2258278e
- Run checks · 644e6d84
  Luke Zappia authored 5 years ago
  
  644e6d84
Oct 10, 2019
- Document Splotch estimation functions · 33fc6396
  Luke Zappia authored 5 years ago
  
  33fc6396
Oct 09, 2019
- Document Splotch simulation functions · 3370996d
  Luke Zappia authored 5 years ago
  
  3370996d
Oct 01, 2019

Luke Zappia authored 5 years ago

* Change default cells.design to end of path
* Add experimental warning
* Avoid resetting cells.design

5141747e

Sep 26, 2019
- Add doublets to SplotchSimulate · 09521792
  Luke Zappia authored 5 years ago
  
  Might need a bit more work...
  09521792
Sep 24, 2019
- Add ambient expression and empty cells to Splotch · 4d22ead2
  Luke Zappia authored 5 years ago
  
  4d22ead2
Sep 19, 2019
- Rescale Phi when sampling in BASiCSSimulate · 4aaf1aeb
  Luke Zappia authored 5 years ago
  
  4aaf1aeb
Sep 17, 2019
- Adjust BASiCSSimulate to match devel BASiCS · 053ea7ca
  Luke Zappia authored 5 years ago
  
  053ea7ca
Sep 09, 2019
- Fix bug in NAMESPACE · d366e9a4
  Luke Zappia authored 5 years ago
  
  d366e9a4
Aug 29, 2019
- Add BCV adjustment to Splotch · 23992b03
  Luke Zappia authored 5 years ago
  
  New exponential correction method for bcv.common estimates
  23992b03
Aug 22, 2019
- Add density sampling option for means, lib sizes · 69ba7ee1
  Luke Zappia authored 5 years ago
  
  69ba7ee1
Aug 21, 2019
- Replace library size log-norm with density · 9cb977b7
  Luke Zappia authored 5 years ago
  
  Not sure if this this a good plan...
  9cb977b7
Aug 20, 2019
- Replace sc_example_counts with mockSCE() · d1fb46dc
  Luke Zappia authored 5 years ago
  
  Tidy and improve examples
  d1fb46dc
- Add expression outliers to Splotch · 6895ab06
  Luke Zappia authored 5 years ago
  
  6895ab06
Aug 14, 2019
- Fix bug in selectFit · bb9e493b
  Luke Zappia authored 5 years ago
  
  Handle missing (not NA) AIC values
  bb9e493b
Aug 13, 2019
- Add splotchEstimate function · 7df8db07
  Luke Zappia authored 5 years ago
  
  7df8db07
Aug 08, 2019
- Simulate counts and organise functions · acd68b3a
  Luke Zappia authored 5 years ago
  
  acd68b3a
- Remove deprecated scater functions · 8dcb671c
  Luke Zappia authored 5 years ago
  
  Still some warnings from BASiCS...
  8dcb671c
Jul 17, 2019
- Add library size params and simulate cell means · 2151840f
  Luke Zappia authored 5 years ago
  
  2151840f
Jul 16, 2019
- Add paths parameters · 7afee23b
  Luke Zappia authored 5 years ago
  
  7afee23b