Commits · 83538788e04fd43acd7529fa28bf7db76920dfd4 · BioCellGen-public / sirplus · GitLab

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Apr 25, 2018
- Bump version to 1.3.5 · 83538788
  Luke Zappia authored 6 years ago
  
  83538788
Apr 19, 2018
- Bump version number · cf9de67f
  Luke Zappia authored 6 years ago
  
  cf9de67f
- Run checks · d639dacf
  Luke Zappia authored 6 years ago
  
  d639dacf
- Add SparseDC to listSims · 753057dc
  Luke Zappia authored 6 years ago
  
  753057dc
- Add sparseDCEstimate · 17903ea5
  Luke Zappia authored 6 years ago
  
  17903ea5
- Add sparseDCSimulate · c8c0fcf8
  Luke Zappia authored 6 years ago
  
  c8c0fcf8
- Add SparseDCParams · 97160948
  Luke Zappia authored 6 years ago
  
  97160948
- Rename params metadata to Params for consistency · 7a27b68d
  Luke Zappia authored 6 years ago
  
  7a27b68d
- Reset path.from if nGroups changes in SplatParams · 5012365e
  Luke Zappia authored 6 years ago
  
  Fixes #36
  5012365e
Apr 18, 2018
- Colourise listSims · 24255ba6
  Luke Zappia authored 6 years ago
  
  24255ba6
- Colourise Params print output · 5a451efc
  Luke Zappia authored 6 years ago
  
  crayon is the best!
  5a451efc
- Improve printing of data.frame parameters · 1028a89f
  Luke Zappia authored 6 years ago
  
  Fixes #17
  1028a89f
- Improve mean fitting warning in splatEstMean · 26cd5310
  Luke Zappia authored 6 years ago
  
  Also add note if lib sizes estimated to be normal Fixes #32
  26cd5310
- Simplify problematic doc links · e21d26b2
  Luke Zappia authored 6 years ago
  
  e21d26b2
Apr 13, 2018
- Run checks · 78dc86d0
  Luke Zappia authored 6 years ago
  
  78dc86d0
- Add lib.norm to splatEstimate · 23c1094a
  Luke Zappia authored 6 years ago
  
  23c1094a
- Add lib.norm to splatSimulate · b37e35c3
  Luke Zappia authored 6 years ago
  
  b37e35c3
- Add lib.norm parameter to SplatParams · 75e8c278
  Luke Zappia authored 6 years ago
  
  75e8c278
Apr 12, 2018
- Add group as a dropout.type option · 0b9bcc33
  Luke Zappia authored 6 years ago
  
  0b9bcc33
- Add dropout.type to splatSimulate · 5e1e826e
  Luke Zappia authored 6 years ago
  
  5e1e826e
- Change dropout.present to dropout.type · 2193558f
  Luke Zappia authored 6 years ago
  
  2193558f
Mar 27, 2018
- Fix parameter passing bug in scDDEstimate · 4316f594
  Luke Zappia authored 7 years ago
  
  4316f594
Jan 30, 2018
- Add tests · 0ac53f3c
  Luke Zappia authored 7 years ago
  
  0ac53f3c
- Remove references to SCESets · 55d75ac1
  Luke Zappia authored 7 years ago
  
  55d75ac1
- Move scater to imports · 74940a18
  Luke Zappia authored 7 years ago
  
  74940a18
- Fix other QC names · e3b42323
  Luke Zappia authored 7 years ago
  
  e3b42323
- Manually calculate RankCounts · c31ea3de
  Luke Zappia authored 7 years ago
  
  c31ea3de
- Remove newSCESet import · 859813ed
  Luke Zappia authored 7 years ago
  
  859813ed
Jan 03, 2018
- Fix vignette error · 58c3ce15
  Luke Zappia authored 7 years ago
  
  58c3ce15
Nov 22, 2017
- Fix zinbwave installation error · b78f0b52
  Luke Zappia authored 7 years ago
  
  b78f0b52
Oct 13, 2017
- Update lun2 reference · 4a4e17dc
  Luke Zappia authored 7 years ago
  
  4a4e17dc
- Update citation · b5fed63d
  Luke Zappia authored 7 years ago
  
  b5fed63d
- Run checks · f5da0def
  Luke Zappia authored 7 years ago
  
  f5da0def
- Convert to SingleCellExperiment · d828f4d3
  Luke Zappia authored 7 years ago
  
  d828f4d3
Oct 05, 2017
- Run checks and bump version · 2a0f5fce
  Luke Zappia authored 7 years ago
  
  View commits for tag v1.1.7 v1.1.7
  
  2a0f5fce
- Add ZINB-WaVE simulation to lists · a9848416
  Luke Zappia authored 7 years ago
  
  a9848416
- Convert mfaSimulate output to counts · 9267f271
  Luke Zappia authored 7 years ago
  
  9267f271
- Convert phenoSimulate output to counts · a681f864
  Luke Zappia authored 7 years ago
  
  a681f864
- Add zinbEstimate · 321c2d0c
  Luke Zappia authored 7 years ago
  
  321c2d0c
Oct 04, 2017
- Add zinbSimulate · 07b6db66
  Luke Zappia authored 7 years ago
  
  07b6db66