Commits · 7378a1aa0194a57586ff1f52a80f540313551f23 · BioCellGen-public / sirplus

Mar 03, 2020
- added testthat tests for eQTL functions · 7378a1aa
  Christina Azodi authored 5 years ago
  
  7378a1aa
Oct 11, 2019
- Check for counts assay when estimating from SCE · 2258278e
  Luke Zappia authored 5 years ago
  
  Fixes #82
  2258278e
- Check for counts assay when estimating from SCE · d6d7dba6
  Luke Zappia authored 5 years ago
  
  Fixes #82
  d6d7dba6
- Run checks · 644e6d84
  Luke Zappia authored 5 years ago
  
  644e6d84
- Run checks · 55145cca
  Luke Zappia authored 5 years ago
  
  55145cca
Aug 20, 2019
- Replace sc_example_counts with mockSCE() · d1fb46dc
  Luke Zappia authored 5 years ago
  
  Tidy and improve examples
  d1fb46dc
- Replace sc_example_counts with mockSCE() · 55794d07
  Luke Zappia authored 5 years ago
  
  Tidy and improve examples
  55794d07
Jun 06, 2019
- Add variable gene correlation plot to compareSCEs · a1193734
  Luke Zappia authored 5 years ago
  
  a1193734
- Add variable gene correlation plot to compareSCEs · 9f19d919
  Luke Zappia authored 5 years ago
  
  9f19d919
Jun 04, 2019
- Add suggested package checks to examples · 73e8e8d8
  Luke Zappia authored 5 years ago
  
  73e8e8d8
- Add suggested package checks to examples · ebb9f4b4
  Luke Zappia authored 5 years ago
  
  ebb9f4b4
Apr 18, 2019
- Add Splat parameters vignette · ff7f4ab7
  Luke Zappia authored 5 years ago
  
  Fix spelling
  View commits for tag v1.7.5 v1.7.5
  
  ff7f4ab7
- Add Splat parameters vignette · 9657ff62
  Luke Zappia authored 5 years ago
  
  Fix spelling
  9657ff62
Apr 17, 2019

Fix issue with parameter order in setParams · d60addd0

Luke Zappia authored 5 years ago

Fixes #69

Checks for SpatParams caused errors if parameters weren't supplied in the right
order. Fixed by making setParams a method and reordering the update list
before setting parameters.

d60addd0

Fix issue with parameter order in setParams · 4268bc15

Luke Zappia authored 5 years ago

Fixes #69

Checks for SpatParams caused errors if parameters weren't supplied in the right
order. Fixed by making setParams a method and reordering the update list
before setting parameters.

4268bc15

Apr 15, 2019
- Minor changes to documentation · 4ff20b74
  Luke Zappia authored 5 years ago
  
  Fixes #64 Also remove lingering references to phenoData and featureData
  4ff20b74
- Minor changes to documentation · 5e9caa07
  Luke Zappia authored 5 years ago
  
  Fixes #64 Also remove lingering references to phenoData and featureData
  5e9caa07
Oct 03, 2018
- Fix BASiCSEstimate tests · eb22e79d
  Luke Zappia authored 6 years ago
  
  eb22e79d
- Fix BASiCSEstimate tests · ab98a13d
  Luke Zappia authored 6 years ago
  
  ab98a13d
Aug 20, 2018
- Fix bug in BASiCSEstimate when no spikes · 9cca2971
  Luke Zappia authored 6 years ago
  
  View commits for tag v1.4.3 v1.4.3
  
  9cca2971
- Fix bug in BASiCSEstimate when no spikes · dba6c49c
  Luke Zappia authored 6 years ago
  
  dba6c49c
- Fix bug in BASiCSEstimate when no spikes · 92ba30f7
  Luke Zappia authored 6 years ago
  
  92ba30f7
- Fix bug in BASiCSEstimate when no spikes · 1eebe229
  Luke Zappia authored 6 years ago
  
  1eebe229
Aug 16, 2018
- Add regression parameter to BASiCSEstimate · 04c65d52
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  04c65d52
- Add regression parameter to BASiCSEstimate · 8cf29fcf
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  8cf29fcf
- Add regression parameter to BASiCSEstimate · abfa78bf
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  abfa78bf
- Add regression parameter to BASiCSEstimate · d337c0ec
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  d337c0ec
- Add suggested package checks to tests · fab0bf21
  Luke Zappia authored 6 years ago
  
  Fixes #56
  fab0bf21
- Add suggested package checks to tests · fe7f23df
  Luke Zappia authored 6 years ago
  
  Fixes #56
  fe7f23df
Apr 30, 2018
- Set seed in sparseDCEstimate tests and bump ver · 065574a9
  Luke Zappia authored 6 years ago
  
  These would sometimes error due to sampling of example dataset
  View commits for tag v1.3.6 v1.3.6
  
  065574a9
- Set seed in sparseDCEstimate tests and bump ver · cd579979
  Luke Zappia authored 6 years ago
  
  These would sometimes error due to sampling of example dataset
  cd579979
Apr 19, 2018
- Bump version number · 496c219f
  Luke Zappia authored 6 years ago
  
  View commits for tag v1.3.4 v1.3.4
  
  496c219f
- Bump version number · cf9de67f
  Luke Zappia authored 6 years ago
  
  cf9de67f
- Add SparseDC tests · 41b4360c
  Luke Zappia authored 6 years ago
  
  41b4360c
- Add SparseDC tests · 2a78f750
  Luke Zappia authored 6 years ago
  
  2a78f750
- Add SparseDCParams · 2e44ca7e
  Luke Zappia authored 6 years ago
  
  2e44ca7e
- Add SparseDCParams · 97160948
  Luke Zappia authored 6 years ago
  
  97160948
- Reset path.from if nGroups changes in SplatParams · d8da3e33
  Luke Zappia authored 6 years ago
  
  Fixes #36
  d8da3e33
- Reset path.from if nGroups changes in SplatParams · 5012365e
  Luke Zappia authored 6 years ago
  
  Fixes #36
  5012365e
Apr 12, 2018
- Add group as a dropout.type option · 07cc2a34
  Luke Zappia authored 6 years ago
  
  07cc2a34