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  1. Jul 16, 2017
  2. Jul 07, 2017
    • Luke Zappia's avatar
      Merge branch 'scDD-est' into basics · b59f9f76
      Luke Zappia authored
      * scDD-est:
        Add counts check to scDDEstimate
      b59f9f76
    • Luke Zappia's avatar
      Add counts check to scDDEstimate · 22ba7c63
      Luke Zappia authored
      22ba7c63
    • Luke Zappia's avatar
      Merge branch 'basics' of github.com:Oshlack/splatter into basics · 79e49e5c
      Luke Zappia authored
      * 'basics' of github.com:Oshlack/splatter:
        Fix lun2Estimate error
      79e49e5c
    • Luke Zappia's avatar
      Fix lun2Estimate error · c05c76a6
      Luke Zappia authored
      Error when scran::computeSumFactors returns negative values
      c05c76a6
    • Luke Zappia's avatar
      Fix lun2Estimate error · 91feb74f
      Luke Zappia authored
      Error when scran::computeSumFactors returns negative values
      91feb74f
    • Luke Zappia's avatar
      Fix default MCMC iterations · 5a6da139
      Luke Zappia authored
      5a6da139
    • Luke Zappia's avatar
      Add estimation without spike-ins · de394861
      Luke Zappia authored
      de394861
    • Luke Zappia's avatar
      Set default MCMC iterations · 70dfd48c
      Luke Zappia authored
      70dfd48c
    • Luke Zappia's avatar
      Merge branch 'scDD-est' into basics · a3a1e83a
      Luke Zappia authored
      * scDD-est:
        Adjust nEE/nEP estimation
        Update scDD estimation
      a3a1e83a
    • Luke Zappia's avatar
      Merge branch 'master' into basics · a7727683
      Luke Zappia authored
      * master:
        Run checks
        Add batch effects to vignette
        Update splatEstimate to set batchCells
        Add batch effects to splatSimulate
        Update SplatParams
        bump x.y.z versions to odd y after creation of 3_5 branch
        bump x.y.z versions to even y prior to creation of 3_5 branch
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
      a7727683
    • Luke Zappia's avatar
      Merge branch 'devel' · 97e60832
      Luke Zappia authored
      * devel:
        bump x.y.z versions to odd y after creation of 3_5 branch
        bump x.y.z versions to even y prior to creation of 3_5 branch
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
        Merge branch 'master' into devel
    • l.zappia's avatar
      Merge branch 'master' into devel · cdfa0caf
      l.zappia authored
      * master: (183 commits)
        Run checks
        Add batch effects to vignette
        Update splatEstimate to set batchCells
        Add batch effects to splatSimulate
        Update SplatParams
        Bump version number
        Update citation
        Fix error handling when fitting means
        Fix comparison plots
        Bioconductor 3.5 release
        bump x.y.z versions to odd y after creation of 3_5 branch
        Creating branch for BioC 3.5 release
        bump x.y.z versions to even y prior to creation of 3_5 branch
        Update NEWS and DESCRIPTION
        Version 0.99.15
        Remove dropout.present estimation
        Add limits to zeros plots
        Adjust default splat DE fac params
        Add BPPARAM to scDDSimulate
        Add summariseDiff function
        ...
      
      From: Luke Zappia <lazappi@users.noreply.github.com>
      
      git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131029 bc3139a8-67e5-0310-9ffc-ced21a209358
      cdfa0caf
    • Luke Zappia's avatar
      Merge branch 'batches' · b62f8ec3
      Luke Zappia authored
      * batches:
        Run checks
        Add batch effects to vignette
        Update splatEstimate to set batchCells
        Add batch effects to splatSimulate
        Update SplatParams
      b62f8ec3
  3. Jul 04, 2017
  4. Jul 03, 2017
  5. Jun 22, 2017
  6. Jun 20, 2017
  7. May 26, 2017
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