- Jul 16, 2017
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Luke Zappia authored
* master: Bump version number Run checks Patch fix to lun2Estimate from basics branch Update summariseDiff
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Luke Zappia authored
* devel:
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l.zappia authored
* master: Bump version number Run checks Patch fix to lun2Estimate from basics branch Update summariseDiff Add counts check to scDDEstimate Adjust nEE/nEP estimation Update scDD estimation From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131258 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
Import SummarizedExperiment to avoid warnings
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Luke Zappia authored
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Luke Zappia authored
* scDD-est: Add counts check to scDDEstimate Adjust nEE/nEP estimation Update scDD estimation
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Luke Zappia authored
* Add MAE, RMSE * Add scaled stats * Add ranks * Only return long table
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- Jul 07, 2017
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Luke Zappia authored
* scDD-est: Add counts check to scDDEstimate
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Luke Zappia authored
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Luke Zappia authored
* 'basics' of github.com:Oshlack/splatter: Fix lun2Estimate error
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Luke Zappia authored
Error when scran::computeSumFactors returns negative values
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Luke Zappia authored
Error when scran::computeSumFactors returns negative values
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
* scDD-est: Adjust nEE/nEP estimation Update scDD estimation
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Luke Zappia authored
* master: Run checks Add batch effects to vignette Update splatEstimate to set batchCells Add batch effects to splatSimulate Update SplatParams bump x.y.z versions to odd y after creation of 3_5 branch bump x.y.z versions to even y prior to creation of 3_5 branch Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel
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Luke Zappia authored
* devel: bump x.y.z versions to odd y after creation of 3_5 branch bump x.y.z versions to even y prior to creation of 3_5 branch Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel Merge branch 'master' into devel
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l.zappia authored
* master: (183 commits) Run checks Add batch effects to vignette Update splatEstimate to set batchCells Add batch effects to splatSimulate Update SplatParams Bump version number Update citation Fix error handling when fitting means Fix comparison plots Bioconductor 3.5 release bump x.y.z versions to odd y after creation of 3_5 branch Creating branch for BioC 3.5 release bump x.y.z versions to even y prior to creation of 3_5 branch Update NEWS and DESCRIPTION Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function ... From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131029 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
* batches: Run checks Add batch effects to vignette Update splatEstimate to set batchCells Add batch effects to splatSimulate Update SplatParams
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- Jul 04, 2017
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
* Add batch parameters * Replace groupCells with group.prob
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Luke Zappia authored
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- Jul 03, 2017
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Luke Zappia authored
Now estimates number of each gene type
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- Jun 22, 2017
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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- Jun 20, 2017
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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Luke Zappia authored
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- May 26, 2017
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Luke Zappia authored
* release-3.5:
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