Commits · 3bf4400c527dfe17b07835761aad040e6cb570fe · BioCellGen-public / sirplus

Apr 19, 2018
- Rename params metadata to Params for consistency · 7a27b68d
  Luke Zappia authored 6 years ago
  
  7a27b68d
Apr 18, 2018
- Simplify problematic doc links · e21d26b2
  Luke Zappia authored 6 years ago
  
  e21d26b2
Sep 29, 2017
- Update scDDSimulate · f2f4f84f
  Luke Zappia authored 7 years ago
  
  f2f4f84f
Sep 07, 2017
- Update simulation documentation · e1de64de
  Luke Zappia authored 7 years ago
  
  e1de64de
- Convert simulations to SingleCellExperiment · 572667ad
  Luke Zappia authored 7 years ago
  
  572667ad
Apr 25, 2017

Creating branch for BioC 3.5 release · 57b7ef54

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129128 bc3139a8-67e5-0310-9ffc-ced21a209358

57b7ef54

Apr 14, 2017

Merge branch 'master' into devel · 3394256b

Luke Zappia authored 7 years ago

* master:
  Version 0.99.15
  Remove dropout.present estimation
  Add limits to zeros plots
  Adjust default splat DE fac params
  Add BPPARAM to scDDSimulate
  Add summariseDiff function

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@128698 bc3139a8-67e5-0310-9ffc-ced21a209358

3394256b

Merge branch 'master' into devel · 786631c5

l.zappia authored 7 years ago

* master:
  Version 0.99.15
  Remove dropout.present estimation
  Add limits to zeros plots
  Adjust default splat DE fac params
  Add BPPARAM to scDDSimulate
  Add summariseDiff function

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@128698 bc3139a8-67e5-0310-9ffc-ced21a209358

786631c5

Add BPPARAM to scDDSimulate · e182e0e1
Luke Zappia authored 7 years ago

e182e0e1

Feb 02, 2017

Merge branch 'master' into devel · 32e53deb

Luke Zappia authored 8 years ago

* master:
  Bump version number
  Update scDD reference
  Add addGeneLengths to vignette
  Add addGeneLengths tests
  Add addGeneLengths function
  Update Roxygen version
  Update README
  Add bioc-devel to Travis

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@126415 bc3139a8-67e5-0310-9ffc-ced21a209358

32e53deb

Merge branch 'master' into devel · 4665c0d8

l.zappia authored 8 years ago

* master:
  Bump version number
  Update scDD reference
  Add addGeneLengths to vignette
  Add addGeneLengths tests
  Add addGeneLengths function
  Update Roxygen version
  Update README
  Add bioc-devel to Travis

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@126415 bc3139a8-67e5-0310-9ffc-ced21a209358

4665c0d8

Update scDD reference · 1b33e9f4
Luke Zappia authored 8 years ago

1b33e9f4

Jan 13, 2017

Adding goSTAG, splatter, karyoploteR, discordant, POST, MCbiclust · b8b4875d

Martin Morgan authored 8 years ago

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@125902 bc3139a8-67e5-0310-9ffc-ced21a209358

b8b4875d

Adding goSTAG, splatter, karyoploteR, discordant, POST, MCbiclust · 070784c4

mtmorgan@fhcrc.org authored 8 years ago

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@125902 bc3139a8-67e5-0310-9ffc-ced21a209358

070784c4

Jan 10, 2017
- Set some examples to not run to save check time · 819acb92
  Luke Zappia authored 8 years ago
  
  819acb92
Dec 29, 2016
- Replace 1:x · c8d8d999
  Luke Zappia authored 8 years ago
  
  c8d8d999
Dec 21, 2016
- Add condition parameter · 0a529c99
  Luke Zappia authored 8 years ago
  
  0a529c99
Oct 15, 2016
- Add scDDSimulate function · 2ab3d0aa
  Luke Zappia authored 8 years ago
  
  2ab3d0aa