Fixes #17

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129128 bc3139a8-67e5-0310-9ffc-ced21a209358

* master:
  Version 0.99.13
  Run checks
  Update Lun2 documentation
  Modify Lun2Params to use data.frame

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@127694 bc3139a8-67e5-0310-9ffc-ced21a209358

* master:
  Version 0.99.13
  Run checks
  Update Lun2 documentation
  Modify Lun2Params to use data.frame

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@127694 bc3139a8-67e5-0310-9ffc-ced21a209358

Store gene parameters in data.frame rather than separate vectors. Forces them
to be same length and allows more independence between gene parameters and
nGenes. Checking for differences between the number of gene parameters and
nGenes, and sampling if necessary, is now done in `lun2Simulate` rather than
`validObject`. The same is true for nCells and lib.sizes.

* master:
  Version 0.99.11
  Run checks
  Fix mean-zeros scale
  Make lun2Estimate parallel
  Allow non-interger Lun 2 lib sizes
  Fix dropout eta

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@127511 bc3139a8-67e5-0310-9ffc-ced21a209358

* master:
  Version 0.99.11
  Run checks
  Fix mean-zeros scale
  Make lun2Estimate parallel
  Allow non-interger Lun 2 lib sizes
  Fix dropout eta

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@127511 bc3139a8-67e5-0310-9ffc-ced21a209358

For compatibility with pseudo-counts

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@125902 bc3139a8-67e5-0310-9ffc-ced21a209358

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@125902 bc3139a8-67e5-0310-9ffc-ced21a209358