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- Sep 03, 2018
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Luke Zappia authored
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- Aug 20, 2018
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Luke Zappia authored
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Luke Zappia authored
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- Aug 16, 2018
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Luke Zappia authored
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Luke Zappia authored
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- Jun 12, 2018
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Luke Zappia authored
Fixes #48
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Luke Zappia authored
Fixes #48
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- May 02, 2018
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Luke Zappia authored
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Luke Zappia authored
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- Apr 30, 2018
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Luke Zappia authored
These would sometimes error due to sampling of example dataset
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- Apr 25, 2018
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Luke Zappia authored
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- Apr 19, 2018
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Luke Zappia authored
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- Apr 13, 2018
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Luke Zappia authored
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Luke Zappia authored
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- Apr 12, 2018
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Luke Zappia authored
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- Mar 27, 2018
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Luke Zappia authored
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Luke Zappia authored
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- Jan 31, 2018
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Luke Zappia authored
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- Jan 03, 2018
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Luke Zappia authored
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- Nov 23, 2017
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Luke Zappia authored
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- Nov 22, 2017
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- Oct 13, 2017
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- Oct 05, 2017
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- Oct 02, 2017
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- Aug 04, 2017
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Luke Zappia authored
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Luke Zappia authored
* master: Fix group factors bug From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131740 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
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- Jul 20, 2017
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Luke Zappia authored
* master: Change mean-dropout to mean-zeros Add verbose to scDDEstimate From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131415 bc3139a8-67e5-0310-9ffc-ced21a209358
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- Jul 16, 2017
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Luke Zappia authored
* master: Bump version number Run checks Patch fix to lun2Estimate from basics branch Update summariseDiff Add counts check to scDDEstimate Adjust nEE/nEP estimation Update scDD estimation From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131258 bc3139a8-67e5-0310-9ffc-ced21a209358
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- Jul 07, 2017
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Luke Zappia authored
* master: (183 commits) Run checks Add batch effects to vignette Update splatEstimate to set batchCells Add batch effects to splatSimulate Update SplatParams Bump version number Update citation Fix error handling when fitting means Fix comparison plots Bioconductor 3.5 release bump x.y.z versions to odd y after creation of 3_5 branch Creating branch for BioC 3.5 release bump x.y.z versions to even y prior to creation of 3_5 branch Update NEWS and DESCRIPTION Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function ... From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@131029 bc3139a8-67e5-0310-9ffc-ced21a209358
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- May 26, 2017
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Luke Zappia authored
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- May 15, 2017
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Luke Zappia authored
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- Apr 28, 2017
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Luke Zappia authored
* Fix scale in zeros diff plots * Fix diff plot colours * Fix panel legends
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- Apr 25, 2017
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hpages@fhcrc.org authored
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129128 bc3139a8-67e5-0310-9ffc-ced21a209358
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- Apr 14, 2017
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Luke Zappia authored
* master: Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@128698 bc3139a8-67e5-0310-9ffc-ced21a209358
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l.zappia authored
* master: Version 0.99.15 Remove dropout.present estimation Add limits to zeros plots Adjust default splat DE fac params Add BPPARAM to scDDSimulate Add summariseDiff function From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@128698 bc3139a8-67e5-0310-9ffc-ced21a209358
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Luke Zappia authored
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- Mar 28, 2017
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Luke Zappia authored
* master: Version 0.99.14 Add panel function to vignette Change var plot scale Run checks Update panel functions Add makeOverallPanel function Add makeDiffPanel function Add options to comparison plots From: Luke Zappia <lazappi@users.noreply.github.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@127789 bc3139a8-67e5-0310-9ffc-ced21a209358
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