Commits · 2193558f0c65bbc1220d0274b6fdade076bafbae · BioCellGen-public / sirplus

Apr 25, 2017

Creating branch for BioC 3.5 release · 57b7ef54

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/splatter@129128 bc3139a8-67e5-0310-9ffc-ced21a209358

57b7ef54

Mar 07, 2017

Merge branch 'master' into devel · cc0bbdea

Luke Zappia authored 8 years ago

* master:
  Version 0.99.10
  Remove out.loProb from vignette
  Update default Splat parameters
  Remove out.loProb parameter
  Update estimation procedure

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@127213 bc3139a8-67e5-0310-9ffc-ced21a209358

cc0bbdea

Merge branch 'master' into devel · 70b4b183

l.zappia authored 8 years ago

* master:
  Version 0.99.10
  Remove out.loProb from vignette
  Update default Splat parameters
  Remove out.loProb parameter
  Update estimation procedure

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@127213 bc3139a8-67e5-0310-9ffc-ced21a209358

70b4b183

Update estimation procedure · 31ab4478
Luke Zappia authored 8 years ago
```
* Winsorize means
* Only high outliers
* Scale edgeR dispersion
```
31ab4478

Feb 02, 2017

Merge branch 'master' into devel · 32e53deb

Luke Zappia authored 8 years ago

* master:
  Bump version number
  Update scDD reference
  Add addGeneLengths to vignette
  Add addGeneLengths tests
  Add addGeneLengths function
  Update Roxygen version
  Update README
  Add bioc-devel to Travis

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@126415 bc3139a8-67e5-0310-9ffc-ced21a209358

32e53deb

Merge branch 'master' into devel · 4665c0d8

l.zappia authored 8 years ago

* master:
  Bump version number
  Update scDD reference
  Add addGeneLengths to vignette
  Add addGeneLengths tests
  Add addGeneLengths function
  Update Roxygen version
  Update README
  Add bioc-devel to Travis

From: Luke Zappia <lazappi@users.noreply.github.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@126415 bc3139a8-67e5-0310-9ffc-ced21a209358

4665c0d8

Update Roxygen version · d4065035
Luke Zappia authored 8 years ago

d4065035

Jan 13, 2017

Adding goSTAG, splatter, karyoploteR, discordant, POST, MCbiclust · b8b4875d

Martin Morgan authored 8 years ago

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@125902 bc3139a8-67e5-0310-9ffc-ced21a209358

b8b4875d

Adding goSTAG, splatter, karyoploteR, discordant, POST, MCbiclust · 070784c4

mtmorgan@fhcrc.org authored 8 years ago

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/splatter@125902 bc3139a8-67e5-0310-9ffc-ced21a209358

070784c4

Oct 25, 2016
- Run checks · 8a739f85
  Luke Zappia authored 8 years ago
  
  8a739f85
Oct 14, 2016
- Rename estimation functions · b9032a69
  Luke Zappia authored 8 years ago
  
  estimateSimpleParams -> simpleEstimate estimateSplatParams -> splatEstimate
  b9032a69
- Modify splatSimulate to use SplatParams · 16cdf173
  Luke Zappia authored 8 years ago
  
  16cdf173
- Add estimateSplatParams and helpers functions · 9b75eea8
  Luke Zappia authored 8 years ago
  
  9b75eea8