Commits · 0ec19e814abf4d45e9c7b52f38dde780eb43f614 · BioCellGen-public / sirplus

Apr 13, 2020
- S3 methods in progress: summary, plot (times, models) · 0ec19e81
  pqiao29 authored 4 years ago
  
  0ec19e81
Apr 12, 2020

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf,... · 1347a149

pqiao29 authored 4 years ago

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf, as.data.frame.seiqhrf, print(control, init, param, model), usage in vignette v2

1347a149

Apr 03, 2020
- add code for setting up time sensitive experiments where parameter values change over time · 96ab8263
  Christina Azodi authored 4 years ago
  
  96ab8263
Mar 27, 2020
- fix devtools::check() · ec061b4a
  pqiao29 authored 5 years ago
  
  ec061b4a
- Copy-editing in vignette; tweaks for R CMD check · 197f9c6d
  Davis McCarthy authored 5 years ago
  
  197f9c6d
Mar 26, 2020
- added hosp plots to vignette · 293d5f05
  Christina Azodi authored 5 years ago
  
  293d5f05
- modified hosp plots to use date as x-axis · 916ece32
  Christina Azodi authored 5 years ago
  
  916ece32
- clean up long functions: infection.FUN · ec6e6fce
  pqiao29 authored 5 years ago
  
  ec6e6fce
- added experiment back into vignette · 7827e9b0
  Christina Azodi authored 5 years ago
  
  7827e9b0
- added logo image · 408779a3
  Christina Azodi authored 5 years ago
  
  408779a3
- updated vignette · 4bea8cae
  Christina Azodi authored 5 years ago
  
  4bea8cae
- import future · 757f670c
  Puxue Qiao authored 5 years ago
  
  757f670c
- add plotting function weekly_local · e869ca3b
  Puxue Qiao authored 5 years ago
  
  e869ca3b
Mar 25, 2020
- working pkg · cee8f1e7
  Puxue Qiao authored 5 years ago
  
  cee8f1e7
- small bug · 8b9f2673
  Christina Azodi authored 5 years ago
  
  8b9f2673
- added SIR plots for single and multiple experiments · d770fab9
  Christina Azodi authored 5 years ago
  
  d770fab9
- plots for distributions · 5c9d1f79
  Christina Azodi authored 5 years ago
  
  5c9d1f79
- adding ploting function · 425dce6b
  Christina Azodi authored 5 years ago
  
  425dce6b
Mar 24, 2020
- working simulation · 47e2563b
  pqiao29 authored 5 years ago
  
  47e2563b
- .. · 592390f7
  pqiao29 authored 5 years ago
  
  592390f7
- moved params into own function file · 3f56064e
  Christina Azodi authored 5 years ago
  
  3f56064e
- fix set.control · 3b76a177
  pqiao29 authored 5 years ago
  
  3b76a177
- fix bug with calling control.icm · b4070853
  Christina Azodi authored 5 years ago
  
  b4070853
- fix bug with init and param not finding function · 452afbb4
  Christina Azodi authored 5 years ago
  
  452afbb4
- update description and namespace · 65058422
  Christina Azodi authored 5 years ago
  
  65058422
- removed splatter files · cb2c845e
  Christina Azodi authored 5 years ago
  
  cb2c845e
Mar 04, 2020
- added eQTL to vignette · efd6d659
  Christina Azodi authored 5 years ago
  
  efd6d659
Feb 04, 2020
- removed weird HEADER tags in vig rmd files · 5afe4d4c
  Christina Azodi authored 5 years ago
  
  5afe4d4c
- removed weird HEADER tags in vig rmd files · 6913b86b
  Christina Azodi authored 5 years ago
  
  6913b86b
Jan 31, 2020
- Update scater functions in vignette · 083be7cc
  Luke Zappia authored 5 years ago
  
  083be7cc
- Update scater functions in vignette · b00bd989
  Luke Zappia authored 5 years ago
  
  b00bd989
Jan 20, 2020
- updated normalize to logNormCounts · 94aab2d1
  Christina Azodi authored 5 years ago
  
  94aab2d1
- updated normalize to logNormCounts · 3d652545
  Christina Azodi authored 5 years ago
  
  3d652545
Oct 11, 2019
- Check spelling · 96e03d87
  Luke Zappia authored 5 years ago
  
  96e03d87
- Check spelling · 39b5b2a7
  Luke Zappia authored 5 years ago
  
  39b5b2a7
- Run checks · 644e6d84
  Luke Zappia authored 5 years ago
  
  644e6d84
- Run checks · 55145cca
  Luke Zappia authored 5 years ago
  
  55145cca
Aug 20, 2019
- Replace sc_example_counts with mockSCE() · d1fb46dc
  Luke Zappia authored 5 years ago
  
  Tidy and improve examples
  d1fb46dc
- Replace sc_example_counts with mockSCE() · 55794d07
  Luke Zappia authored 5 years ago
  
  Tidy and improve examples
  55794d07
Aug 08, 2019
- Remove deprecated scater functions · 8dcb671c
  Luke Zappia authored 5 years ago
  
  Still some warnings from BASiCS...
  8dcb671c