Commits · 0ec19e814abf4d45e9c7b52f38dde780eb43f614 · BioCellGen-public / sirplus

Apr 13, 2020
- S3 methods in progress: summary, plot (times, models) · 0ec19e81
  pqiao29 authored 4 years ago
  
  0ec19e81
Apr 12, 2020

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf,... · 1347a149

pqiao29 authored 5 years ago

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf, as.data.frame.seiqhrf, print(control, init, param, model), usage in vignette v2

1347a149

Apr 08, 2020
- add quantile 95% CI in summary · 3dc7a609
  pqiao29 authored 5 years ago
  
  3dc7a609
- clear function names: icm.seiqhrf -> seiqhrf · 29f9599f
  pqiao29 authored 5 years ago
  
  29f9599f
Apr 07, 2020
- add summary_seiqhrf · 457cde42
  pqiao29 authored 5 years ago
  
  457cde42
Apr 06, 2020
- add from E to R: arec.rand, arec.rate, arec.dist.shape, arec.dist.scale · 326ed0c3
  pqiao29 authored 5 years ago
  
  326ed0c3
Apr 03, 2020
- confirm all changed functions return identical values as the originals · ceaa6b8a
  pqiao29 authored 5 years ago
  
  ceaa6b8a
Apr 01, 2020
- finish clean up arrivals.FUN · 78e69880
  pqiao29 authored 5 years ago
  
  78e69880
- finish clean up departures.FUN · 7eb6ff39
  pqiao29 authored 5 years ago
  
  7eb6ff39
Mar 30, 2020
- clean up recovery.FUN: till line 117 in revised (recovery.FUN) and line 192 in... · e97db92d
  pqiao29 authored 5 years ago
  
  clean up recovery.FUN: till line 117 in revised (recovery.FUN) and line 192 in original (progress.seiqhrf.icm)
  e97db92d
- clean up initialize.FUN · c65408da
  pqiao29 authored 5 years ago
  
  c65408da
Mar 27, 2020
- Add testthat: infection.FUN returns identical output as Churches' infection.seiqhrf.icm · 2d04bb00
  pqiao29 authored 5 years ago
  
  2d04bb00
Mar 25, 2020
- working pkg · cee8f1e7
  Puxue Qiao authored 5 years ago
  
  cee8f1e7
Mar 24, 2020
- removed splatter files · cb2c845e
  Christina Azodi authored 5 years ago
  
  cb2c845e
Mar 04, 2020
- added eQTL to vignette · efd6d659
  Christina Azodi authored 5 years ago
  
  efd6d659
Mar 03, 2020
- added testthat tests for eQTL functions · 7378a1aa
  Christina Azodi authored 5 years ago
  
  7378a1aa
Oct 11, 2019
- Check for counts assay when estimating from SCE · 2258278e
  Luke Zappia authored 5 years ago
  
  Fixes #82
  2258278e
- Check for counts assay when estimating from SCE · d6d7dba6
  Luke Zappia authored 5 years ago
  
  Fixes #82
  d6d7dba6
- Run checks · 644e6d84
  Luke Zappia authored 5 years ago
  
  644e6d84
- Run checks · 55145cca
  Luke Zappia authored 5 years ago
  
  55145cca
Aug 20, 2019
- Replace sc_example_counts with mockSCE() · d1fb46dc
  Luke Zappia authored 5 years ago
  
  Tidy and improve examples
  d1fb46dc
- Replace sc_example_counts with mockSCE() · 55794d07
  Luke Zappia authored 5 years ago
  
  Tidy and improve examples
  55794d07
Jun 06, 2019
- Add variable gene correlation plot to compareSCEs · a1193734
  Luke Zappia authored 5 years ago
  
  a1193734
- Add variable gene correlation plot to compareSCEs · 9f19d919
  Luke Zappia authored 5 years ago
  
  9f19d919
Jun 04, 2019
- Add suggested package checks to examples · 73e8e8d8
  Luke Zappia authored 5 years ago
  
  73e8e8d8
- Add suggested package checks to examples · ebb9f4b4
  Luke Zappia authored 5 years ago
  
  ebb9f4b4
Apr 17, 2019

Fix issue with parameter order in setParams · d60addd0

Luke Zappia authored 5 years ago

Fixes #69

Checks for SpatParams caused errors if parameters weren't supplied in the right
order. Fixed by making setParams a method and reordering the update list
before setting parameters.

d60addd0

Fix issue with parameter order in setParams · 4268bc15

Luke Zappia authored 5 years ago

Fixes #69

Checks for SpatParams caused errors if parameters weren't supplied in the right
order. Fixed by making setParams a method and reordering the update list
before setting parameters.

4268bc15

Apr 15, 2019
- Minor changes to documentation · 4ff20b74
  Luke Zappia authored 5 years ago
  
  Fixes #64 Also remove lingering references to phenoData and featureData
  4ff20b74
- Minor changes to documentation · 5e9caa07
  Luke Zappia authored 5 years ago
  
  Fixes #64 Also remove lingering references to phenoData and featureData
  5e9caa07
Oct 03, 2018
- Fix BASiCSEstimate tests · eb22e79d
  Luke Zappia authored 6 years ago
  
  eb22e79d
- Fix BASiCSEstimate tests · ab98a13d
  Luke Zappia authored 6 years ago
  
  ab98a13d
Aug 20, 2018
- Fix bug in BASiCSEstimate when no spikes · 9cca2971
  Luke Zappia authored 6 years ago
  
  View commits for tag v1.4.3 v1.4.3
  
  9cca2971
- Fix bug in BASiCSEstimate when no spikes · dba6c49c
  Luke Zappia authored 6 years ago
  
  dba6c49c
- Fix bug in BASiCSEstimate when no spikes · 92ba30f7
  Luke Zappia authored 6 years ago
  
  92ba30f7
- Fix bug in BASiCSEstimate when no spikes · 1eebe229
  Luke Zappia authored 6 years ago
  
  1eebe229
Aug 16, 2018
- Add regression parameter to BASiCSEstimate · 04c65d52
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  04c65d52
- Add regression parameter to BASiCSEstimate · 8cf29fcf
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  8cf29fcf
- Add regression parameter to BASiCSEstimate · abfa78bf
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  abfa78bf
- Add regression parameter to BASiCSEstimate · d337c0ec
  Luke Zappia authored 6 years ago
  
  Also add new BASiCS tests
  d337c0ec