Commits · 0409143d94862d4e6b6b368cc98f769944e75566 · BioCellGen-public / sirplus

Apr 16, 2020
- fix check warnings · 0409143d
  pqiao29 authored 4 years ago
  
  0409143d
- big spell check · 62a3fa69
  Christina Azodi authored 4 years ago
  
  62a3fa69
- fix plotting list instead of single sim · ba14be5e
  Christina Azodi authored 4 years ago
  
  ba14be5e
Apr 15, 2020
- add print.summary · c6fb1798
  pqiao29 authored 4 years ago
  
  c6fb1798
- add plot(method = weekly_local) · 6f93922a
  pqiao29 authored 4 years ago
  
  6f93922a
Apr 13, 2020
- S3 methods in progress: summary, plot (times, models) · 0ec19e81
  pqiao29 authored 4 years ago
  
  0ec19e81
Apr 12, 2020

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf,... · 1347a149

pqiao29 authored 4 years ago

S3 in progress: control_seiqhrf, init_seiqhrf, param_seiqhrf, as.data.frame.seiqhrf, print(control, init, param, model), usage in vignette v2

1347a149

Apr 08, 2020
- add quantile 95% CI in summary · 3dc7a609
  pqiao29 authored 4 years ago
  
  3dc7a609
- clear function names: icm.seiqhrf -> seiqhrf · 29f9599f
  pqiao29 authored 4 years ago
  
  29f9599f
- clear function names: control.icm -> control_seiqhrf · 4259cd14
  pqiao29 authored 4 years ago
  
  4259cd14
Apr 07, 2020
- add summary_seiqhrf · 457cde42
  pqiao29 authored 4 years ago
  
  457cde42
Apr 06, 2020
- make default values consistent with previous version · 0bc5ac41
  pqiao29 authored 4 years ago
  
  0bc5ac41
- add from E to R: arec.rand, arec.rate, arec.dist.shape, arec.dist.scale · 326ed0c3
  pqiao29 authored 4 years ago
  
  326ed0c3
Apr 03, 2020
- exported new functions by cba · 27150f9c
  Christina Azodi authored 4 years ago
  
  27150f9c
- minor change in document · 582c5c94
  pqiao29 authored 4 years ago
  
  582c5c94
Apr 01, 2020
- finish clean up arrivals.FUN · 78e69880
  pqiao29 authored 5 years ago
  
  78e69880
- finish clean up departures.FUN · 7eb6ff39
  pqiao29 authored 5 years ago
  
  7eb6ff39
Mar 30, 2020
- clean up recovery.FUN: till line 117 in revised (recovery.FUN) and line 192 in... · e97db92d
  pqiao29 authored 5 years ago
  
  clean up recovery.FUN: till line 117 in revised (recovery.FUN) and line 192 in original (progress.seiqhrf.icm)
  e97db92d
- clean up initialize.FUN · c65408da
  pqiao29 authored 5 years ago
  
  c65408da
Mar 29, 2020
- Fixing description and docs · 01f9c99c
  Davis McCarthy authored 5 years ago
  
  01f9c99c
Mar 27, 2020
- fix devtools::check() · ec061b4a
  pqiao29 authored 5 years ago
  
  ec061b4a
- Copy-editing in vignette; tweaks for R CMD check · 197f9c6d
  Davis McCarthy authored 5 years ago
  
  197f9c6d
Mar 26, 2020
- clean up long functions: infection.FUN · ec6e6fce
  pqiao29 authored 5 years ago
  
  ec6e6fce
- clean up exception control · 98304c29
  pqiao29 authored 5 years ago
  
  98304c29
- import future · 757f670c
  Puxue Qiao authored 5 years ago
  
  757f670c
- merge · f469bd0c
  Puxue Qiao authored 5 years ago
  
  f469bd0c
- add plotting function weekly_local · e869ca3b
  Puxue Qiao authored 5 years ago
  
  e869ca3b
- Tidying up pkg · 103a3be0
  Davis McCarthy authored 5 years ago
  
  103a3be0
Mar 25, 2020
- plots for distributions · 5c9d1f79
  Christina Azodi authored 5 years ago
  
  5c9d1f79
Mar 24, 2020
- fixed minor bug · a0ba05be
  Christina Azodi authored 5 years ago
  
  a0ba05be
- moved params into own function file · 3f56064e
  Christina Azodi authored 5 years ago
  
  3f56064e
- update description and namespace · 65058422
  Christina Azodi authored 5 years ago
  
  65058422
- removed splatter files · cb2c845e
  Christina Azodi authored 5 years ago
  
  cb2c845e
Mar 03, 2020
- added testthat tests for eQTL functions · 7378a1aa
  Christina Azodi authored 5 years ago
  
  7378a1aa
Feb 20, 2020
- fix r check bug · 56d2cec4
  Christina Azodi authored 5 years ago
  
  56d2cec4
Feb 14, 2020
- added eQTLEstimate function and eqtl params as an S4 parameters object · d8f09d03
  Christina Azodi authored 5 years ago
  
  d8f09d03
Feb 04, 2020
- added vcf and gff example data · b3c4d4a0
  Christina Azodi authored 5 years ago
  
  b3c4d4a0
- added vcf and gff example data · fa104838
  Christina Azodi authored 5 years ago
  
  fa104838
- update to use vcf and gff object instead of path · 650060f5
  Christina Azodi authored 5 years ago
  
  650060f5
- update to use vcf and gff object instead of path · 945263d3
  Christina Azodi authored 5 years ago
  
  945263d3