Tidy up and bump version

DESCRIPTION

 Package: splatter
 Type: Package
 Title: Simple Simulation of Single-cell RNA Sequencing Data
-Version: 0.99.5
-Date: 2016-12-28
+Version: 0.99.6
+Date: 2016-12-29
 Author: Luke Zappia
 Authors@R:
     c(person("Luke", "Zappia", role = c("aut", "cre"),

NAMESPACE

@@ -90,5 +90,4 @@ importFrom(stats,rnbinom)
 importFrom(stats,rnorm)
 importFrom(stats,rpois)
 importFrom(stats,runif)
-importFrom(utils,data)
 importFrom(utils,head)

NEWS.md

+# 0.99.6
+
+* Add installation to vignette
+* Add detail about counts matrix to vignette
+* Replace 1:x with seq_len/seq_along
+
 # 0.99.5
 
 * Set R_TESTS environment

R/SCDDParams-methods.R

 #' @rdname newParams
-#' @importFrom utils data
 #' @importFrom methods new
 #' @export
 newSCDDParams <- function(...) {
 
     if (!requireNamespace("scDD", quietly = TRUE)) {
-        stop("The scDD simulation requires the 'scDD' package. ",
-             "See https://github.com/kdkorthauer/scDD for installation.")
+        stop("The scDD simulation requires the 'scDD' package.")
     }
 
-    data("scDatEx", package = "scDD", envir = environment())
+    utils::data("scDatEx", package = "scDD", envir = environment())
 
     params <- new("SCDDParams", SCdat = scDatEx)
 

R/scDD-estimate.R

@@ -38,8 +38,7 @@ scDDEstimate.SCESet <- function(counts, conditions, params = newSCDDParams()) {
 scDDEstimate.matrix <- function(counts, conditions, params = newSCDDParams()) {
 
     if (!requireNamespace("scDD", quietly = TRUE)) {
-        stop("The scDD simulation requires the 'scDD' package. ",
-             "See https://github.com/kdkorthauer/scDD for installation.")
+        stop("The scDD simulation requires the 'scDD' package.")
     }
 
     checkmate::assertClass(params, "SCDDParams")

appveyor.yml

@@ -12,6 +12,12 @@ install:
 
 # Adapt as necessary starting from here
 
+environment:
+    matrix:
+    - R_VERSION: devel
+
+    - R_VERSION: release
+
 build_script:
   - travis-tool.sh install_bioc_deps